RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 KLK12Q9UKR0 248 aa5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 QSER1Q2KHR3 1735 aa5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 MDC1Q14676 2089 aaKnown RBP5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 FAM223BA6NKX1 122 aa5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 RPL39P62891 51 aaKnown RBP5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 FOXL2NBQ6ZUU3 175 aa5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 C1orf210Q8IVY1 113 aa5.9□□□□□ -1.46
LIMCH1-201ENST00000313860 LMO7DNF2Z398 122 aa5.9□□□□□ -1.47
LIMCH1-201ENST00000313860 BUB1B-PAK6H3BSN5 160 aa5.9□□□□□ -1.47
LIMCH1-201ENST00000313860 C8orf17Q9NRJ1 99 aa5.9□□□□□ -1.47
LIMCH1-201ENST00000313860 IGKV2-28A0A075B6P5 120 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 TRAV7A0A075B6U4 112 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 A0A0G2JNJ9 132 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 IGKV2D-28P01615 120 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 Q9UFV3 132 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 TDRG1Q3Y452 100 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 DNAJC13O75165 2243 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 ADCYAP1P18509 176 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 STRCQ7RTU9 1775 aa5.89□□□□□ -1.47
LIMCH1-201ENST00000313860 IGKV2D-30A0A075B6S6 120 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 A0A0G2JRQ6 117 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 C5orf63A6NC05 138 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 IGKV2-30P06310 120 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 SBSPONQ8IVN8 264 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 NRGNQ92686 78 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 SHANK2-AS3Q9BTD1 123 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 AHDC1Q5TGY3 1603 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 CIRBP-AS1Q8TBR5 109 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 DEFB4AO15263 64 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 DEFB123Q8N688 67 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 COL8A2P25067 703 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 TNRC6BQ9UPQ9 1833 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 IGKV1-12A0A0C4DH73 117 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 LOC100131303A0A0U1RQF7 123 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 M0R378 163 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 HMGA1P17096 107 aaKnown RBP5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 USMG5Q96IX5 58 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 ZNF831Q5JPB2 1677 aa5.88□□□□□ -1.47
LIMCH1-201ENST00000313860 ELSPBP1Q96BH3 223 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 LINC00308Q8TCZ7 52 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 SPRY4Q9C004 299 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 PYGO1Q9Y3Y4 419 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 ALPK3Q96L96 1907 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 COL5A3P25940 1745 aaPredicted RBP5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 A0A0A0MQY5 61 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 CELA3BP08861 270 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 SCN2AQ99250 2005 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 MYLKQ15746 1914 aa5.87□□□□□ -1.47
LIMCH1-201ENST00000313860 MYO9BQ13459 2157 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 KIAA1217Q5T5P2 1943 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 ATP6V0E1O15342 81 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 RPL34P49207 117 aaKnown RBP5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 CDC42SE1Q9NRR8 79 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 Q6ZT83 130 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 C7orf33Q8WU49 177 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 IGLV1-36A0A0B4J1U3 117 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 SPACA3Q8IXA5 215 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 LTBP1Q14766 1721 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 Q0VFX4 171 aa5.86□□□□□ -1.47
LIMCH1-201ENST00000313860 RUSC1-AS1Q66K80 236 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 Q6ZR03 302 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 Q6ZRM9 215 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 PARP14Q460N5 1801 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 IGLV4-69A0A075B6H9 119 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 RPL37AP8A6NKH3 93 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 LINC00205P59089 165 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 PRR25Q96S07 402 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 TSC2P49815 1807 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 CCL24O00175 119 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 IGHV1-46P01743 117 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 CD164Q04900 197 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 ZNF497Q6ZNH5 498 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 DOCK1Q14185 1865 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 SCN3AQ9NY46 2000 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 A0A087WYN8 130 aa5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 C9orf129Q5T035 196 aaKnown RBP5.85□□□□□ -1.47
LIMCH1-201ENST00000313860 SDK1Q7Z5N4 2213 aa5.84□□□□□ -1.47
LIMCH1-201ENST00000313860 C17orf100A8MU93 164 aa5.84□□□□□ -1.47
LIMCH1-201ENST00000313860 SSC5DA1L4H1 1573 aa5.84□□□□□ -1.47
LIMCH1-201ENST00000313860 FSHBP01225 129 aa5.84□□□□□ -1.47
LIMCH1-201ENST00000313860 LINC00526Q96FQ7 95 aa5.84□□□□□ -1.47
LIMCH1-201ENST00000313860 LY6LH3BQJ8 138 aa5.84□□□□□ -1.48
LIMCH1-201ENST00000313860 COL14A1Q05707 1796 aaKnown RBP5.84□□□□□ -1.48
LIMCH1-201ENST00000313860 SBF1O95248 1867 aa5.84□□□□□ -1.48
LIMCH1-201ENST00000313860 MSMPQ1L6U9 139 aa5.84□□□□□ -1.48
LIMCH1-201ENST00000313860 CEMP1Q6PRD7 247 aaPredicted RBP5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 HIGD1BQ9P298 99 aa5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 KNL1Q8NG31 2342 aa5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 C5orf24Q7Z6I8 188 aa5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 SCN1AP35498 2009 aa5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 E9PLN8 166 aa5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 GBF1Q92538 1859 aa5.83□□□□□ -1.48
LIMCH1-201ENST00000313860 A0A0J9YXY3 114 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 MAPK1IP1LQ8NDC0 245 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 IGLV3-25P01717 112 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 HHLA3Q9XRX5 114 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 A0A0G2JMZ2 1700 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 LRRC37A2A6NM11 1700 aa5.82□□□□□ -1.48
LIMCH1-201ENST00000313860 LRRC37AA6NMS7 1700 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms