RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IGHV3-16A0A0C4DH30 117 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 Q8N1Y9 231 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 POM121L12Q8N7R1 296 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 RNF152Q8N8N0 203 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 ODF3Q96PU9 254 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 SIVA1O15304 175 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 SEC11AP67812 179 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 FAM74A4Q5TZK3 123 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 C2orf66Q6UXQ4 117 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 CCDC168Q8NDH2 2452 aa14.89□□□□□ -0.03
VPS53-201ENST00000291074 TRAV8-6A0A0B4J262 113 aa14.88□□□□□ -0.03
VPS53-201ENST00000291074 F5H697 171 aa14.88□□□□□ -0.03
VPS53-201ENST00000291074 RIPPLY3P57055 190 aa14.88□□□□□ -0.03
VPS53-201ENST00000291074 C9orf85Q96MD7 179 aa14.88□□□□□ -0.03
VPS53-201ENST00000291074 TENM4Q6N022 2769 aa14.87□□□□□ -0.03
VPS53-201ENST00000291074 LRRC75A-AS1Q8N1F1 130 aa14.87□□□□□ -0.03
VPS53-201ENST00000291074 KNCNA6PVL3 124 aa14.86□□□□□ -0.03
VPS53-201ENST00000291074 SAP30O75446 220 aa14.86□□□□□ -0.03
VPS53-201ENST00000291074 KHDC1LQ5JSQ8 128 aa14.86□□□□□ -0.03
VPS53-201ENST00000291074 FLNAP21333 2647 aaKnown RBP14.86□□□□□ -0.03
VPS53-201ENST00000291074 IGHV1OR15-1A0A075B7D0 117 aa14.86□□□□□ -0.03
VPS53-201ENST00000291074 AMTNQ6UX39 209 aa14.86□□□□□ -0.03
VPS53-201ENST00000291074 NF1P21359 2839 aa14.86□□□□□ -0.03
VPS53-201ENST00000291074 F8VRH5 84 aa14.85□□□□□ -0.03
VPS53-201ENST00000291074 MAPKAPK5-AS1Q8N8E1 139 aa14.85□□□□□ -0.03
VPS53-201ENST00000291074 NEXN-AS1Q8NBZ9 246 aa14.85□□□□□ -0.03
VPS53-201ENST00000291074 TRAV12-1A0A0B4J245 112 aa14.85□□□□□ -0.03
VPS53-201ENST00000291074 H7C1H1 209 aa14.85□□□□□ -0.03
VPS53-201ENST00000291074 BAALCQ8WXS3 180 aa14.85□□□□□ -0.03
VPS53-201ENST00000291074 NAA38Q9BRA0 125 aaKnown RBP14.85□□□□□ -0.03
VPS53-201ENST00000291074 CHTOPQ9Y3Y2 248 aaKnown RBP14.85□□□□□ -0.03
VPS53-201ENST00000291074 TRBV25-1A0A075B6N4 114 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 K7EMI3 77 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 DUSP14O95147 198 aaKnown RBP14.84□□□□□ -0.03
VPS53-201ENST00000291074 PPP1R17O96001 155 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 PLNP26678 52 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 HIST2H2BCQ6DN03 193 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 FOXI2Q6ZQN5 318 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 OR11H1Q8NG94 326 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 CHD6Q8TD26 2715 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 TMEM238C9JI98 176 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 RBMY1A1P0DJD3 496 aaKnown RBP14.84□□□□□ -0.03
VPS53-201ENST00000291074 RBMY1CP0DJD4 496 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 RBMY1FQ15415 496 aaKnown RBP14.84□□□□□ -0.03
VPS53-201ENST00000291074 Q8N2B8 174 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 CHAC1Q9BUX1 264 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 AKAP9Q99996 3911 aa14.84□□□□□ -0.03
VPS53-201ENST00000291074 GAGE12BA1L429 117 aa14.83□□□□□ -0.03
VPS53-201ENST00000291074 A6NDN8 102 aa14.83□□□□□ -0.04
VPS53-201ENST00000291074 POLR2KP53803 58 aaKnown RBP14.83□□□□□ -0.04
VPS53-201ENST00000291074 DEFB131AP59861 70 aa14.83□□□□□ -0.04
VPS53-201ENST00000291074 RAB37Q96AX2 223 aa14.82□□□□□ -0.04
VPS53-201ENST00000291074 HLA-DRB4P13762 266 aa14.82□□□□□ -0.04
VPS53-201ENST00000291074 GCSHP23434 173 aa14.82□□□□□ -0.04
VPS53-201ENST00000291074 ZNF56Q15929 161 aa14.82□□□□□ -0.04
VPS53-201ENST00000291074 WFDC11Q8NEX6 87 aa14.82□□□□□ -0.04
VPS53-201ENST00000291074 HLA-DRB4X5D2U9 266 aa14.82□□□□□ -0.04
VPS53-201ENST00000291074 LINC01619G3V211 115 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 HTN1P15515 57 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 TP53TG1Q9Y2A0 90 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 WNK1Q9H4A3 2382 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 SDHAF1A6NFY7 115 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 FXYD2P54710 66 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 RPL39P62891 51 aaKnown RBP14.81□□□□□ -0.04
VPS53-201ENST00000291074 ZFP2Q6ZN57 461 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 JMJD8Q96S16 334 aa14.81□□□□□ -0.04
VPS53-201ENST00000291074 CUBNO60494 3623 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 PRSS29PA6NIE9 313 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 CRYGDP07320 174 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 MORN3Q6PF18 240 aaPredicted RBP14.8□□□□□ -0.04
VPS53-201ENST00000291074 TMEM61Q8N0U2 210 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 HIGD1BQ9P298 99 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 PRM2P04554 102 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 SYT8Q8NBV8 401 aa14.8□□□□□ -0.04
VPS53-201ENST00000291074 H3BRM9 83 aa14.79□□□□□ -0.04
VPS53-201ENST00000291074 CYSLTR1Q9Y271 337 aa14.79□□□□□ -0.04
VPS53-201ENST00000291074 ZNF256Q9Y2P7 627 aaPredicted RBP14.79□□□□□ -0.04
VPS53-201ENST00000291074 RBMY1BA6NDE4 496 aaKnown RBP14.79□□□□□ -0.04
VPS53-201ENST00000291074 RBMY1EA6NEQ0 496 aaKnown RBP14.79□□□□□ -0.04
VPS53-201ENST00000291074 TSHBP01222 138 aa14.79□□□□□ -0.04
VPS53-201ENST00000291074 RBMY1DP0C7P1 496 aaKnown RBP14.79□□□□□ -0.04
VPS53-201ENST00000291074 KLHL30-AS1Q8NEE0 82 aa14.79□□□□□ -0.04
VPS53-201ENST00000291074 DLX4Q92988 240 aaPredicted RBP14.79□□□□□ -0.04
VPS53-201ENST00000291074 H3BUT2 72 aa14.79□□□□□ -0.04
VPS53-201ENST00000291074 ZNF876PQ49A33 203 aa14.79□□□□□ -0.04
VPS53-201ENST00000291074 RPL32P62910 135 aaKnown RBP14.78□□□□□ -0.04
VPS53-201ENST00000291074 C4orf3Q8WVX3 66 aa14.78□□□□□ -0.04
VPS53-201ENST00000291074 C9orf118A6NHY6 69 aa14.78□□□□□ -0.04
VPS53-201ENST00000291074 M0QY20 66 aa14.78□□□□□ -0.04
VPS53-201ENST00000291074 VCYO14598 125 aa14.78□□□□□ -0.04
VPS53-201ENST00000291074 SETD2Q9BYW2 2564 aaPredicted RBP14.77□□□□□ -0.04
VPS53-201ENST00000291074 EMP1P54849 157 aa14.77□□□□□ -0.04
VPS53-201ENST00000291074 KIR2DL4Q99706 377 aa14.77□□□□□ -0.04
VPS53-201ENST00000291074 Q6ZSV7 163 aa14.76□□□□□ -0.05
VPS53-201ENST00000291074 C11orf44Q8N8P7 122 aa14.76□□□□□ -0.05
VPS53-201ENST00000291074 H3BMM0 161 aa14.76□□□□□ -0.05
VPS53-201ENST00000291074 K7ERU9 68 aa14.76□□□□□ -0.05
VPS53-201ENST00000291074 ACANP16112 2415 aa14.76□□□□□ -0.05
VPS53-201ENST00000291074 IGIPA6NJ69 53 aa14.75□□□□□ -0.05
VPS53-201ENST00000291074 K7ERJ3 54 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms