RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 SSNA1O43805 119 aa11.83□□□□□ -0.52
CIITA-215ENST00000637439 UPK1BO75841 260 aa11.83□□□□□ -0.52
CIITA-215ENST00000637439 ARL14EPLP0DKL9 152 aa11.83□□□□□ -0.52
CIITA-215ENST00000637439 SMUG1Q53HV7 270 aa11.83□□□□□ -0.52
CIITA-215ENST00000637439 ZFP2Q6ZN57 461 aa11.83□□□□□ -0.52
CIITA-215ENST00000637439 PSG8Q9UQ74 426 aa11.83□□□□□ -0.52
CIITA-215ENST00000637439 A0A087WWC5 75 aa11.82□□□□□ -0.52
CIITA-215ENST00000637439 A8MWV9 139 aa11.82□□□□□ -0.52
CIITA-215ENST00000637439 GGTLC3B5MD39 225 aa11.82□□□□□ -0.52
CIITA-215ENST00000637439 HMGB3O15347 200 aaKnown RBP11.82□□□□□ -0.52
CIITA-215ENST00000637439 CDC34P49427 236 aaPredicted RBP11.82□□□□□ -0.52
CIITA-215ENST00000637439 WFDC2Q14508 124 aa11.82□□□□□ -0.52
CIITA-215ENST00000637439 PIK3CD-AS1Q5SR53 167 aa11.82□□□□□ -0.52
CIITA-215ENST00000637439 WFDC1Q9HC57 220 aa11.82□□□□□ -0.52
CIITA-215ENST00000637439 STAG3L2P0CL84 134 aa11.81□□□□□ -0.52
CIITA-215ENST00000637439 STAG3L3P0CL85 134 aa11.81□□□□□ -0.52
CIITA-215ENST00000637439 RNASE3P12724 160 aaKnown RBP11.81□□□□□ -0.52
CIITA-215ENST00000637439 FLI1Q01543 452 aaPredicted RBP11.81□□□□□ -0.52
CIITA-215ENST00000637439 SAPCD1Q5SSQ6 148 aa11.81□□□□□ -0.52
CIITA-215ENST00000637439 RMI2Q96E14 147 aa11.81□□□□□ -0.52
CIITA-215ENST00000637439 MARVELD1Q9BSK0 173 aa11.81□□□□□ -0.52
CIITA-215ENST00000637439 GAGE12JA6NER3 117 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 LECT2O14960 151 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 SEC11BP0C7V7 166 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 LINC00694P0DN24 101 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 FGF8P55075 233 aaPredicted RBP11.8□□□□□ -0.52
CIITA-215ENST00000637439 GAGE1Q13065 139 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 GAGE4Q13068 117 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 GAGE5Q13069 117 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 GAGE13Q4V321 117 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 DAZ4Q86SG3 579 aaKnown RBP11.8□□□□□ -0.52
CIITA-215ENST00000637439 TMEM75Q8N9X5 138 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 SUN5Q8TC36 379 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 PARLQ9H300 379 aa11.8□□□□□ -0.52
CIITA-215ENST00000637439 DAZ3Q9NR90 486 aaKnown RBP11.8□□□□□ -0.52
CIITA-215ENST00000637439 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.79□□□□□ -0.52
CIITA-215ENST00000637439 S100A4P26447 101 aaKnown RBP11.79□□□□□ -0.52
CIITA-215ENST00000637439 PRNTQ86SH4 94 aa11.79□□□□□ -0.52
CIITA-215ENST00000637439 Q8N3U1 123 aa11.79□□□□□ -0.52
CIITA-215ENST00000637439 CYB561D1Q8N8Q1 229 aa11.79□□□□□ -0.52
CIITA-215ENST00000637439 OR2G3Q8NGZ4 309 aa11.79□□□□□ -0.52
CIITA-215ENST00000637439 EPDR1Q9UM22 224 aa11.79□□□□□ -0.52
CIITA-215ENST00000637439 URGCP-MRPS24S4R325 110 aa11.79□□□□□ -0.52
CIITA-215ENST00000637439 IGLV2-11P01706 119 aa11.78□□□□□ -0.52
CIITA-215ENST00000637439 GCHFRP30047 84 aa11.78□□□□□ -0.52
CIITA-215ENST00000637439 SUMO1P63165 101 aaKnown RBP11.78□□□□□ -0.52
CIITA-215ENST00000637439 LGALSLQ3ZCW2 172 aaPredicted RBP11.78□□□□□ -0.52
CIITA-215ENST00000637439 Q8N976 141 aa11.78□□□□□ -0.52
CIITA-215ENST00000637439 RAB24Q969Q5 203 aa11.78□□□□□ -0.52
CIITA-215ENST00000637439 TMEM167BQ9NRX6 74 aa11.78□□□□□ -0.52
CIITA-215ENST00000637439 MBP02144 154 aa11.77□□□□□ -0.53
CIITA-215ENST00000637439 BAALCQ8WXS3 180 aa11.77□□□□□ -0.53
CIITA-215ENST00000637439 RBFOX3A6NFN3 312 aa11.76□□□□□ -0.53
CIITA-215ENST00000637439 ASIPP42127 132 aa11.76□□□□□ -0.53
CIITA-215ENST00000637439 SERTAD4-AS1Q5TG53 156 aa11.76□□□□□ -0.53
CIITA-215ENST00000637439 OR2T35Q8NGX2 323 aa11.76□□□□□ -0.53
CIITA-215ENST00000637439 LINC00479Q96M42 142 aa11.76□□□□□ -0.53
CIITA-215ENST00000637439 PSMG3Q9BT73 122 aaPredicted RBP11.76□□□□□ -0.53
CIITA-215ENST00000637439 FABP5P3A8MUU1 101 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 RHODO00212 210 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 CXorf1O96002 111 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 SERF2P84101 59 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 IFITM3Q01628 133 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 SCXQ7RTU7 201 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 HSD17B11Q8NBQ5 300 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 IL36BQ9NZH7 164 aa11.75□□□□□ -0.53
CIITA-215ENST00000637439 IGKV3D-20A0A0C4DH25 116 aa11.74□□□□□ -0.53
CIITA-215ENST00000637439 RNF222A6NCQ9 220 aa11.74□□□□□ -0.53
CIITA-215ENST00000637439 DEFA1P59665 94 aa11.74□□□□□ -0.53
CIITA-215ENST00000637439 DEFA3P59666 94 aa11.74□□□□□ -0.53
CIITA-215ENST00000637439 SYT8Q8NBV8 401 aa11.74□□□□□ -0.53
CIITA-215ENST00000637439 CHAC1Q9BUX1 264 aa11.74□□□□□ -0.53
CIITA-215ENST00000637439 IGKV2D-24A0A075B6R9 120 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 A0A1W2PRE2 83 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 ELOBQ15370 118 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 LINC01620Q4KN68 170 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 UFSP1Q6NVU6 142 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 NIT1Q86X76 327 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 C14orf178Q8N769 122 aaPredicted RBP11.73□□□□□ -0.53
CIITA-215ENST00000637439 CHCHD7Q9BUK0 85 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 SAMD10Q9BYL1 202 aa11.73□□□□□ -0.53
CIITA-215ENST00000637439 ACTR3CQ9C0K3 210 aaPredicted RBP11.73□□□□□ -0.53
CIITA-215ENST00000637439 Q9UF83 564 aa11.72□□□□□ -0.53
CIITA-215ENST00000637439 ARL2-SNX15V9GYD0 113 aa11.72□□□□□ -0.53
CIITA-215ENST00000637439 A0A087WX48 190 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 B4DEV8 164 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 ATP6V0CP27449 155 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 DNLZQ5SXM8 178 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 DMRTA1Q5VZB9 504 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 KCNIP4Q6PIL6 250 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 JPT2Q9H910 190 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 KLK12Q9UKR0 248 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 TNFSF18Q9UNG2 199 aa11.71□□□□□ -0.53
CIITA-215ENST00000637439 OXTP01178 125 aa11.7□□□□□ -0.54
CIITA-215ENST00000637439 IFNA7P01567 189 aa11.7□□□□□ -0.54
CIITA-215ENST00000637439 OR11H4Q8NGC9 324 aa11.7□□□□□ -0.54
CIITA-215ENST00000637439 TRAV34A0A0B4J273 112 aa11.69□□□□□ -0.54
CIITA-215ENST00000637439 H3BVH4 76 aa11.69□□□□□ -0.54
CIITA-215ENST00000637439 Q0VG73 95 aa11.69□□□□□ -0.54
CIITA-215ENST00000637439 C14orf177Q52M58 125 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms