RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 TMEM8BA6NDV4 472 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 FXYD2P54710 66 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 ZFAND2AQ8N6M9 145 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 TMEM160Q9NX00 188 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 PKD1L2Q7Z442 2459 aa11.29□□□□□ -0.6
CLN3-253ENST00000636977 MT-ATP8P03928 68 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 MRPL35Q9NZE8 188 aaKnown RBP11.28□□□□□ -0.6
CLN3-253ENST00000636977 IGKCP01834 107 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 SYT8Q8NBV8 401 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 OR9G4Q8NGQ1 327 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 FAM223BA6NKX1 122 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 H3BUX3 64 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 ZC2HC1BQ5TFG8 222 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 FAM223AQ8IWN6 122 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 ANAPC13Q9BS18 74 aa11.28□□□□□ -0.6
CLN3-253ENST00000636977 TRBV7-9A0A0J9YWB2 115 aa11.27□□□□□ -0.61
CLN3-253ENST00000636977 SOCS3O14543 225 aa11.27□□□□□ -0.61
CLN3-253ENST00000636977 TSPAN13O95857 204 aa11.27□□□□□ -0.61
CLN3-253ENST00000636977 DEFB104AQ8WTQ1 72 aa11.27□□□□□ -0.61
CLN3-253ENST00000636977 LAGE3Q14657 143 aa11.27□□□□□ -0.61
CLN3-253ENST00000636977 RPL39LQ96EH5 51 aaKnown RBP11.27□□□□□ -0.61
CLN3-253ENST00000636977 A0A1B0GWB2 263 aa11.26□□□□□ -0.61
CLN3-253ENST00000636977 GNRH2O43555 120 aa11.26□□□□□ -0.61
CLN3-253ENST00000636977 PF4V1P10720 104 aa11.26□□□□□ -0.61
CLN3-253ENST00000636977 C9orf139Q6ZV77 190 aa11.26□□□□□ -0.61
CLN3-253ENST00000636977 HIF1ANQ9NWT6 349 aa11.26□□□□□ -0.61
CLN3-253ENST00000636977 RNASE4P34096 147 aaKnown RBP11.26□□□□□ -0.61
CLN3-253ENST00000636977 C14orf178Q8N769 122 aaPredicted RBP11.26□□□□□ -0.61
CLN3-253ENST00000636977 ZNF418Q8TF45 676 aaPredicted RBP11.26□□□□□ -0.61
CLN3-253ENST00000636977 IGHV4-4A0A075B6R2 117 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 SIVA1O15304 175 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 MAPKAPK5-AS1Q8N8E1 139 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 OR4X2Q8NGF9 303 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 DPM2O94777 84 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 AGRNO00468 2067 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 IGHV4-30-2A0A087WSY4 118 aa11.25□□□□□ -0.61
CLN3-253ENST00000636977 CRIP2P52943 208 aaPredicted RBP11.25□□□□□ -0.61
CLN3-253ENST00000636977 NDUFA4O00483 81 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 FOXI2Q6ZQN5 318 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 OR10J6PQ8NGY7 276 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 RASL10AQ92737 203 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 AVPP01185 164 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 MYOZ3Q8TDC0 251 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 PRORYQ9H606 182 aa11.24□□□□□ -0.61
CLN3-253ENST00000636977 USP9XQ93008 2570 aaPredicted RBP11.24□□□□□ -0.61
CLN3-253ENST00000636977 TRBV25-1A0A075B6N4 114 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 APOMO95445 188 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 S100A4P26447 101 aaKnown RBP11.23□□□□□ -0.61
CLN3-253ENST00000636977 CHAC1Q9BUX1 264 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 LINC00477Q96M19 166 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 SMIM2Q9BVW6 85 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 ZANQ9Y493 2812 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 MUC4Q99102 2169 aa11.23□□□□□ -0.61
CLN3-253ENST00000636977 ATP5LO75964 103 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 IGHG2P01859 326 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 C10orf105Q8TEF2 133 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 PIMREGQ9BSJ6 248 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 RHPN1-AS1Q9BWJ2 59 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 BRI3O95415 125 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 MGPP08493 103 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 SRSF1Q07955 248 aaKnown RBP eCLIP11.22□□□□□ -0.61
CLN3-253ENST00000636977 SFTA2Q6UW10 78 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 NRGNQ92686 78 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 CCL19Q99731 98 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 CYSLTR1Q9Y271 337 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 A6NDX4 124 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 OR11H12B2RN74 326 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 RNF223E7ERA6 249 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 F8W1H4 67 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 GAGE13Q4V321 117 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 OR11H1Q8NG94 326 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 OR11H2Q8NH07 326 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 ERG28Q9UKR5 140 aa11.22□□□□□ -0.61
CLN3-253ENST00000636977 DOPEY2Q9Y3R5 2298 aa11.21□□□□□ -0.61
CLN3-253ENST00000636977 TRAV21A0A0B4J279 112 aa11.21□□□□□ -0.61
CLN3-253ENST00000636977 C10orf99Q6UWK7 81 aa11.21□□□□□ -0.61
CLN3-253ENST00000636977 PHLDA3Q9Y5J5 127 aa11.21□□□□□ -0.61
CLN3-253ENST00000636977 RNASE3P12724 160 aaKnown RBP11.21□□□□□ -0.62
CLN3-253ENST00000636977 XGP55808 180 aa11.21□□□□□ -0.62
CLN3-253ENST00000636977 GAGE5Q13069 117 aa11.21□□□□□ -0.62
CLN3-253ENST00000636977 GAGE6Q13070 117 aa11.21□□□□□ -0.62
CLN3-253ENST00000636977 JPT2Q9H910 190 aa11.21□□□□□ -0.62
CLN3-253ENST00000636977 A0A087WX48 190 aa11.2□□□□□ -0.62
CLN3-253ENST00000636977 ASIPP42127 132 aa11.2□□□□□ -0.62
CLN3-253ENST00000636977 OVOL1O14753 267 aa11.2□□□□□ -0.62
CLN3-253ENST00000636977 ATP5J2P56134 94 aa11.2□□□□□ -0.62
CLN3-253ENST00000636977 SUMO2P61956 95 aaKnown RBP11.2□□□□□ -0.62
CLN3-253ENST00000636977 FAM19A4Q96LR4 140 aa11.2□□□□□ -0.62
CLN3-253ENST00000636977 LENEPQ9Y5L5 61 aa11.2□□□□□ -0.62
CLN3-253ENST00000636977 POLQO75417 2590 aa11.19□□□□□ -0.62
CLN3-253ENST00000636977 SORL1Q92673 2214 aa11.19□□□□□ -0.62
CLN3-253ENST00000636977 PIEZO1Q92508 2521 aa11.19□□□□□ -0.62
CLN3-253ENST00000636977 ID1P41134 155 aa11.19□□□□□ -0.62
CLN3-253ENST00000636977 RPL32P62910 135 aaKnown RBP11.19□□□□□ -0.62
CLN3-253ENST00000636977 C1QTNF4Q9BXJ3 329 aa11.19□□□□□ -0.62
CLN3-253ENST00000636977 USP9YO00507 2555 aaPredicted RBP11.19□□□□□ -0.62
CLN3-253ENST00000636977 PRSS29PA6NIE9 313 aa11.18□□□□□ -0.62
CLN3-253ENST00000636977 USMG5Q96IX5 58 aa11.18□□□□□ -0.62
CLN3-253ENST00000636977 SCGB3A1Q96QR1 104 aa11.18□□□□□ -0.62
CLN3-253ENST00000636977 DPH3P1Q9H4G8 78 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms