RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PGPEP1LA6NFU8 196 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 RNASE3P12724 160 aaKnown RBP12.5□□□□□ -0.41
CLN3-247ENST00000636351 RAB14P61106 215 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 RASL10AQ92737 203 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 SMIM12Q96EX1 92 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 C9orf85Q96MD7 179 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 C18orf15Q96N68 181 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 DNAH17Q9UFH2 4485 aa12.5□□□□□ -0.41
CLN3-247ENST00000636351 MUC4Q99102 2169 aa12.49□□□□□ -0.41
CLN3-247ENST00000636351 A0A1B0GVY2 172 aa12.49□□□□□ -0.41
CLN3-247ENST00000636351 IGLV2-8P01709 118 aa12.49□□□□□ -0.41
CLN3-247ENST00000636351 HOXA5P20719 270 aa12.49□□□□□ -0.41
CLN3-247ENST00000636351 RPL19P84098 196 aaKnown RBP12.49□□□□□ -0.41
CLN3-247ENST00000636351 ZNF876PQ49A33 203 aa12.49□□□□□ -0.41
CLN3-247ENST00000636351 BIN3Q9NQY0 253 aa12.49□□□□□ -0.41
CLN3-247ENST00000636351 TRAV26-1A0A087WT03 109 aa12.48□□□□□ -0.41
CLN3-247ENST00000636351 A0A0J9YY99 117 aa12.48□□□□□ -0.41
CLN3-247ENST00000636351 NUDT3O95989 172 aa12.48□□□□□ -0.41
CLN3-247ENST00000636351 SFTA3P0C7M3 94 aa12.48□□□□□ -0.41
CLN3-247ENST00000636351 C15orf53Q8NAA6 179 aa12.48□□□□□ -0.41
CLN3-247ENST00000636351 OR4C5Q8NGB2 326 aa12.48□□□□□ -0.41
CLN3-247ENST00000636351 PKHD1P08F94 4074 aa12.47□□□□□ -0.41
CLN3-247ENST00000636351 TRAV4A0A0B4J268 109 aa12.47□□□□□ -0.41
CLN3-247ENST00000636351 TRGV4A0A0C4DH28 118 aa12.47□□□□□ -0.41
CLN3-247ENST00000636351 POM121L12Q8N7R1 296 aa12.47□□□□□ -0.41
CLN3-247ENST00000636351 SMIM7Q9BQ49 75 aa12.47□□□□□ -0.41
CLN3-247ENST00000636351 IL36BQ9NZH7 164 aa12.47□□□□□ -0.41
CLN3-247ENST00000636351 M0R2N4 97 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 P01737 135 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 SRP19P09132 144 aaKnown RBP12.46□□□□□ -0.41
CLN3-247ENST00000636351 ARMS2P0C7Q2 107 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 P0DMU3 169 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 FAM231AP0DMU4 169 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 FAM231CP0DMU5 169 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 SYT8Q8NBV8 401 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 ZNF479Q96JC4 524 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 PHLDA3Q9Y5J5 127 aa12.46□□□□□ -0.41
CLN3-247ENST00000636351 DNAH11Q96DT5 4516 aa12.46□□□□□ -0.42
CLN3-247ENST00000636351 PRSS29PA6NIE9 313 aa12.45□□□□□ -0.42
CLN3-247ENST00000636351 NDUFS6O75380 124 aaKnown RBP12.45□□□□□ -0.42
CLN3-247ENST00000636351 PEA15Q15121 130 aa12.45□□□□□ -0.42
CLN3-247ENST00000636351 DNLZQ5SXM8 178 aa12.45□□□□□ -0.42
CLN3-247ENST00000636351 OR2D3Q8NGH3 330 aa12.45□□□□□ -0.42
CLN3-247ENST00000636351 RTL8CO15255 209 aa12.44□□□□□ -0.42
CLN3-247ENST00000636351 CXCL1P09341 107 aa12.44□□□□□ -0.42
CLN3-247ENST00000636351 UBE2DNLQ8IWF7 75 aa12.44□□□□□ -0.42
CLN3-247ENST00000636351 RYR1P21817 5038 aa12.44□□□□□ -0.42
CLN3-247ENST00000636351 DYNC1H1Q14204 4646 aaKnown RBP12.44□□□□□ -0.42
CLN3-247ENST00000636351 C19orf71A6NCJ1 209 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 ZNF727A8MUV8 499 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 K7EN84 100 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 M0R381 172 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 PAX4O43316 350 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 MED14OSP0DP75 135 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 RPS20P60866 119 aaKnown RBP12.43□□□□□ -0.42
CLN3-247ENST00000636351 SLAQ13239 276 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 OCC1Q8TAD7 63 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 PTH2Q96A98 100 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 TPPP3Q9BW30 176 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 PRO0255Q9UI72 69 aa12.43□□□□□ -0.42
CLN3-247ENST00000636351 XKRY2A2RUG3 117 aa12.42□□□□□ -0.42
CLN3-247ENST00000636351 SRSF3P84103 164 aaKnown RBP12.42□□□□□ -0.42
CLN3-247ENST00000636351 FHL2Q14192 279 aa12.42□□□□□ -0.42
CLN3-247ENST00000636351 ZFP82Q8N141 532 aa12.42□□□□□ -0.42
CLN3-247ENST00000636351 HHLA3Q9XRX5 114 aa12.42□□□□□ -0.42
CLN3-247ENST00000636351 PKD1P98161 4303 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 IGHV3-73A0A0B4J1V6 119 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 RS1O15537 224 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 GZMBP10144 247 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 CFAP126Q5VTH2 177 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 DMRTA1Q5VZB9 504 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 RNASE7Q9H1E1 156 aaKnown RBP12.41□□□□□ -0.42
CLN3-247ENST00000636351 SCRT2Q9NQ03 307 aa12.41□□□□□ -0.42
CLN3-247ENST00000636351 A8MWV9 139 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 C9JQL5 133 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 CRYBA4P53673 196 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 IFITM2Q01629 132 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 PIK3CD-AS1Q5SR53 167 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 ZNF575Q86XF7 245 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 NUDT10Q8NFP7 164 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 NUDT11Q96G61 164 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 VSIG2Q96IQ7 327 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 RPP21Q9H633 154 aaKnown RBP12.4□□□□□ -0.42
CLN3-247ENST00000636351 LY96Q9Y6Y9 160 aa12.4□□□□□ -0.42
CLN3-247ENST00000636351 MUC21A0A0G2JKD1 596 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 MUC21A0A140T8X8 626 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 H3BNG1 76 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 SSTP61278 116 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 FAM74A3Q4VXF1 159 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 CLLU1Q5K131 121 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 SPANXN1Q5VSR9 72 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 FER1L6-AS1Q8NA97 138 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 OR10AG1Q8NH19 301 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 SMDT1Q9H4I9 107 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 ICOSQ9Y6W8 199 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 NACAE9PAV3 2078 aa12.39□□□□□ -0.43
CLN3-247ENST00000636351 IGLV2-18A0A075B6J9 118 aa12.38□□□□□ -0.43
CLN3-247ENST00000636351 CIDEAO60543 219 aa12.38□□□□□ -0.43
CLN3-247ENST00000636351 FAM74A4Q5TZK3 123 aa12.38□□□□□ -0.43
CLN3-247ENST00000636351 JPT2Q9H910 190 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms