RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TRBV25-1A0A075B6N4 114 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 DUX3Q96PT4 197 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 GEMIN7Q9H840 131 aaKnown RBP11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 GATA1P15976 413 aaPredicted RBP11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 LINC01356Q8N9X3 169 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 C20orf78Q9BR46 151 aa11.14□□□□□ -0.63
SHROOM1-208ENST00000617339 EDN2P20800 178 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 F6UB75 175 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 UNQ9165/PRO28630Q6UXU0 137 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 AJUBAQ96IF1 538 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 SMAD5-AS1Q9Y6J3 95 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 OVOL3O00110 214 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 SIVA1O15304 175 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 ZNF80P51504 273 aaPredicted RBP11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 ANXA2RQ3ZCQ2 193 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 CCDC140Q96MF4 163 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 HIST1H4GQ99525 98 aa11.13□□□□□ -0.63
SHROOM1-208ENST00000617339 IGLL5B9A064 214 aa11.12□□□□□ -0.63
SHROOM1-208ENST00000617339 SVIPQ8NHG7 77 aa11.12□□□□□ -0.63
SHROOM1-208ENST00000617339 SS18L2Q9UHA2 77 aa11.12□□□□□ -0.63
SHROOM1-208ENST00000617339 GAGE13Q4V321 117 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 C1orf122Q6ZSJ8 110 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 Q8N6K4 173 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 F8P00451 2351 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 SH2D1AO60880 128 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 PAX8Q06710 450 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 C5orf56Q8N8D9 126 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 WI2-2373I1.2A0A1W2PRP0 233 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 IGF1P05019 195 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 CEND1Q8N111 149 aa11.11□□□□□ -0.63
SHROOM1-208ENST00000617339 GCN1Q92616 2671 aaKnown RBP11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 OOSP1A8MZH6 123 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 H3BVH4 76 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 IGKCP01834 107 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 MAPKAPK5-AS1Q8N8E1 139 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 TMEM78Q5T7P6 136 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 FOXI2Q6ZQN5 318 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 SLC25A16P16260 332 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 WFDC11Q8NEX6 87 aa11.1□□□□□ -0.63
SHROOM1-208ENST00000617339 LOC107984156A0A0G2JMH3 177 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 ARL17AQ8IVW1 177 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 ZNF502Q8TBZ5 544 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 ZNF418Q8TF45 676 aaPredicted RBP11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 ATRQ13535 2644 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 IGHV3OR16-12A0A075B7B8 117 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 HOXA3O43365 443 aaPredicted RBP11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 FAM110DQ8TAY7 271 aaPredicted RBP11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 TMEM158Q8WZ71 300 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 APOMO95445 188 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 SCGB1A1P11684 91 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 ODF1Q14990 250 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 C12orf74Q32Q52 190 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 SYT8Q8NBV8 401 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 MAP1LC3AQ9H492 121 aa11.09□□□□□ -0.63
SHROOM1-208ENST00000617339 F8W1H4 67 aa11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 DEFB136Q30KP8 78 aa11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 PHLDA1Q8WV24 401 aaPredicted RBP11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 SMPXQ9UHP9 88 aa11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 TMEM14CQ9P0S9 112 aa11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 PIFOQ8TCI5 191 aa11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 PRR25Q96S07 402 aa11.08□□□□□ -0.64
SHROOM1-208ENST00000617339 NBPF19A0A087WUL8 3843 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 DEFB113Q30KQ7 82 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 DYNLRB2Q8TF09 96 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 MRPL35Q9NZE8 188 aaKnown RBP11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 E9PLD3 99 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 BUB3O43684 328 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 SPINK8P0C7L1 97 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 HHLA3Q9XRX5 114 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 A0A1B0GW15 77 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 PTH2Q96A98 100 aa11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 ZNF48Q96MX3 618 aaPredicted RBP11.07□□□□□ -0.64
SHROOM1-208ENST00000617339 DPM2O94777 84 aa11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 SYNJ2BPP57105 145 aa11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 CYSLTR1Q9Y271 337 aa11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 MRPS12O15235 138 aaKnown RBP11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 ZNF688P0C7X2 276 aa11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 DSCR9P59020 149 aa11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 SRSF2Q01130 221 aaKnown RBP11.06□□□□□ -0.64
SHROOM1-208ENST00000617339 F5H697 171 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 GATA3P23771 443 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 EBI3Q14213 229 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 MRAP2Q96G30 205 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 TENM4Q6N022 2769 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 MT-ATP8P03928 68 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 SPATA25Q9BR10 227 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 AGPAT4-IT1Q9H0P7 198 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 Q6AWC8 147 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 ZNF493Q6ZR52 646 aa11.05□□□□□ -0.64
SHROOM1-208ENST00000617339 TRAV26-2A0A0B4J265 109 aa11.04□□□□□ -0.64
SHROOM1-208ENST00000617339 PSMB2P49721 201 aa11.04□□□□□ -0.64
SHROOM1-208ENST00000617339 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.04□□□□□ -0.64
SHROOM1-208ENST00000617339 C8orf86Q6ZUL3 223 aa11.04□□□□□ -0.64
SHROOM1-208ENST00000617339 ANAPC13Q9BS18 74 aa11.04□□□□□ -0.64
SHROOM1-208ENST00000617339 TNFRSF6BO95407 300 aa11.04□□□□□ -0.64
SHROOM1-208ENST00000617339 SPANXN1Q5VSR9 72 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 M0R381 172 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 IGHG4P01861 327 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 OR10J6PQ8NGY7 276 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 MRPL16Q9NX20 251 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms