RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 MLST8Q9BVC4 326 aa13.11□□□□□ -0.31
CDX1-202ENST00000616154 TREM1Q9NP99 234 aa13.11□□□□□ -0.31
CDX1-202ENST00000616154 A0A1W2PPQ1 181 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 C9JCJ5 164 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 SPINK4O60575 86 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 ESRGQ1W209 222 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 MAPKAPK5-AS1Q8N8E1 139 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 SGK494Q96LW2 274 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 ZFP30Q9Y2G7 519 aa13.1□□□□□ -0.31
CDX1-202ENST00000616154 MRPS16Q9Y3D3 137 aaKnown RBP13.1□□□□□ -0.31
CDX1-202ENST00000616154 UBE2G1P62253 170 aa13.09□□□□□ -0.31
CDX1-202ENST00000616154 FAM74A3Q4VXF1 159 aa13.09□□□□□ -0.31
CDX1-202ENST00000616154 SPATA12Q7Z6I5 190 aa13.09□□□□□ -0.31
CDX1-202ENST00000616154 SMIM12Q96EX1 92 aa13.09□□□□□ -0.31
CDX1-202ENST00000616154 TP53TG3Q9ULZ0 132 aa13.09□□□□□ -0.31
CDX1-202ENST00000616154 TMEM218A2RU14 115 aa13.08□□□□□ -0.32
CDX1-202ENST00000616154 IGLV2-8P01709 118 aa13.08□□□□□ -0.32
CDX1-202ENST00000616154 BTF3P20290 206 aaKnown RBP13.08□□□□□ -0.32
CDX1-202ENST00000616154 TDRG1Q3Y452 100 aa13.08□□□□□ -0.32
CDX1-202ENST00000616154 SAPCD1Q5SSQ6 148 aa13.08□□□□□ -0.32
CDX1-202ENST00000616154 PRNTQ86SH4 94 aa13.08□□□□□ -0.32
CDX1-202ENST00000616154 SFTA3P0C7M3 94 aa13.07□□□□□ -0.32
CDX1-202ENST00000616154 CENPWQ5EE01 88 aa13.07□□□□□ -0.32
CDX1-202ENST00000616154 TMEM183AQ8IXX5 376 aa13.07□□□□□ -0.32
CDX1-202ENST00000616154 SMIM7Q9BQ49 75 aa13.07□□□□□ -0.32
CDX1-202ENST00000616154 LY96Q9Y6Y9 160 aa13.07□□□□□ -0.32
CDX1-202ENST00000616154 BAGE2Q86Y30 109 aa13.06□□□□□ -0.32
CDX1-202ENST00000616154 NDFIP1Q9BT67 221 aa13.06□□□□□ -0.32
CDX1-202ENST00000616154 TRGV1A0A0A0MS02 117 aa13.05□□□□□ -0.32
CDX1-202ENST00000616154 ZNF727A8MUV8 499 aa13.05□□□□□ -0.32
CDX1-202ENST00000616154 GNG4P50150 75 aa13.05□□□□□ -0.32
CDX1-202ENST00000616154 ZNF415Q09FC8 603 aa13.05□□□□□ -0.32
CDX1-202ENST00000616154 SLC7A5P1Q8MH63 180 aa13.05□□□□□ -0.32
CDX1-202ENST00000616154 VSIG2Q96IQ7 327 aa13.05□□□□□ -0.32
CDX1-202ENST00000616154 TRGV2A0A075B6R0 118 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 ADCYAP1P18509 176 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 CEBPGP53567 150 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 ZNF674Q2M3X9 581 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 C10orf91Q5T1B1 145 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 Q8N1X5 172 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 C8orf49Q96NF6 230 aa13.04□□□□□ -0.32
CDX1-202ENST00000616154 A0A096LPF7 62 aa13.03□□□□□ -0.32
CDX1-202ENST00000616154 KRTAP10-2P60368 255 aa13.03□□□□□ -0.32
CDX1-202ENST00000616154 SMUG1Q53HV7 270 aa13.03□□□□□ -0.32
CDX1-202ENST00000616154 ZC2HC1AQ96GY0 325 aa13.03□□□□□ -0.32
CDX1-202ENST00000616154 SEC11CQ9BY50 192 aa13.03□□□□□ -0.32
CDX1-202ENST00000616154 TRGV11A0A075B6L2 103 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 TRAV21A0A0B4J279 112 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 CRIP1P50238 77 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 MUC21Q5SSG8 566 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 OCC1Q8TAD7 63 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 RASL10AQ92737 203 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 SPXQ9BT56 116 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 MDFICQ9P1T7 246 aa13.02□□□□□ -0.33
CDX1-202ENST00000616154 PGPEP1LA6NFU8 196 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 K7EN84 100 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 ZNF80P51504 273 aaPredicted RBP13.01□□□□□ -0.33
CDX1-202ENST00000616154 TMEM241Q24JQ0 296 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 FAM159AQ6UWV7 190 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 LINC01551Q86U37 167 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 SDF2L1Q9HCN8 221 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 MRPL16Q9NX20 251 aaKnown RBP13.01□□□□□ -0.33
CDX1-202ENST00000616154 NAT8Q9UHE5 227 aa13.01□□□□□ -0.33
CDX1-202ENST00000616154 CARHSP1Q9Y2V2 147 aaKnown RBP13.01□□□□□ -0.33
CDX1-202ENST00000616154 GCGP01275 180 aa13□□□□□ -0.33
CDX1-202ENST00000616154 LINC00315P59091 139 aa13□□□□□ -0.33
CDX1-202ENST00000616154 NHLRC2Q8NBF2 726 aa13□□□□□ -0.33
CDX1-202ENST00000616154 PFN1P07737 140 aaKnown RBP12.99□□□□□ -0.33
CDX1-202ENST00000616154 SLAQ13239 276 aa12.99□□□□□ -0.33
CDX1-202ENST00000616154 IGHV3-16A0A0C4DH30 117 aa12.98□□□□□ -0.33
CDX1-202ENST00000616154 C19orf71A6NCJ1 209 aa12.98□□□□□ -0.33
CDX1-202ENST00000616154 F8W036 122 aa12.98□□□□□ -0.33
CDX1-202ENST00000616154 RPL23P62829 140 aaKnown RBP12.98□□□□□ -0.33
CDX1-202ENST00000616154 Q6ZRN7 208 aaPredicted RBP12.98□□□□□ -0.33
CDX1-202ENST00000616154 SCRT2Q9NQ03 307 aa12.98□□□□□ -0.33
CDX1-202ENST00000616154 BIN3Q9NQY0 253 aa12.98□□□□□ -0.33
CDX1-202ENST00000616154 PRO0255Q9UI72 69 aa12.98□□□□□ -0.33
CDX1-202ENST00000616154 FABP5P3A8MUU1 101 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 KRBOX1C9JBD0 128 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 SIVA1O15304 175 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 PNRC1Q12796 327 aaPredicted RBP12.97□□□□□ -0.33
CDX1-202ENST00000616154 FHL2Q14192 279 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 FAM162BQ5T6X4 162 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 KCNS1Q96KK3 526 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 ICOSQ9Y6W8 199 aa12.97□□□□□ -0.33
CDX1-202ENST00000616154 PAX4O43316 350 aa12.96□□□□□ -0.33
CDX1-202ENST00000616154 TYMSP04818 313 aa12.96□□□□□ -0.33
CDX1-202ENST00000616154 FAM231DQ6ZW35 169 aa12.96□□□□□ -0.33
CDX1-202ENST00000616154 ISOC2Q96AB3 205 aa12.96□□□□□ -0.33
CDX1-202ENST00000616154 C11orf21Q9P2W6 132 aa12.96□□□□□ -0.33
CDX1-202ENST00000616154 SH2D1AO60880 128 aa12.95□□□□□ -0.34
CDX1-202ENST00000616154 NXPH4O95158 308 aa12.95□□□□□ -0.34
CDX1-202ENST00000616154 MGST1P10620 155 aaKnown RBP12.95□□□□□ -0.34
CDX1-202ENST00000616154 CRYBA4P53673 196 aa12.95□□□□□ -0.34
CDX1-202ENST00000616154 M0R2P5 195 aa12.94□□□□□ -0.34
CDX1-202ENST00000616154 GNRH2O43555 120 aa12.94□□□□□ -0.34
CDX1-202ENST00000616154 NAGKQ9UJ70 344 aa12.94□□□□□ -0.34
CDX1-202ENST00000616154 HHLA3Q9XRX5 114 aa12.94□□□□□ -0.34
CDX1-202ENST00000616154 TRAV4A0A0B4J268 109 aa12.93□□□□□ -0.34
CDX1-202ENST00000616154 IGHV3-53P01767 116 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms