RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 C16orf54Q6UWD8 224 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 VCX2Q9H322 139 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 HHLA3Q9XRX5 114 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 MOB4Q9Y3A3 225 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 H3BUX3 64 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 MSRB2Q9Y3D2 182 aa9.67□□□□□ -0.86
LIG1-221ENST00000613670 C9JAW5 83 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 KLRB1Q12918 225 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 PIP4P2Q8N4L2 257 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 SDHAF1A6NFY7 115 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 VCYO14598 125 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 C20orf78Q9BR46 151 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 TLN2Q9Y4G6 2542 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 TRAV12-2A0A075B6T6 113 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 ATP6V0BQ99437 205 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 SPTBN4Q9H254 2564 aa9.66□□□□□ -0.86
LIG1-221ENST00000613670 A0A0U1RRA0 63 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 RPL39P62891 51 aaKnown RBP9.65□□□□□ -0.86
LIG1-221ENST00000613670 C1orf122Q6ZSJ8 110 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 RBAKDNA6NC62 111 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 E9PLD3 99 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 JPT2Q9H910 190 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 ERG28Q9UKR5 140 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 ZNF876PQ49A33 203 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 CCDC140Q96MF4 163 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 TM2D2Q9BX73 214 aa9.65□□□□□ -0.86
LIG1-221ENST00000613670 HIVEP3Q5T1R4 2406 aa9.65□□□□□ -0.87
LIG1-221ENST00000613670 INSL3P51460 131 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 SNRPD3P62318 126 aaKnown RBP9.64□□□□□ -0.87
LIG1-221ENST00000613670 DUX5Q96PT3 197 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 ADARB2-AS1A8MUL3 147 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 F8W735 103 aaPredicted RBP9.64□□□□□ -0.87
LIG1-221ENST00000613670 TRBV12-3P01733 135 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 LGALS1P09382 135 aaKnown RBP9.64□□□□□ -0.87
LIG1-221ENST00000613670 LY6DQ14210 128 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 UNQ9165/PRO28630Q6UXU0 137 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 GATD1Q8NB37 220 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 LY6G5BQ8NDX9 201 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 SPXQ9BT56 116 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 GEMIN7Q9H840 131 aaKnown RBP9.64□□□□□ -0.87
LIG1-221ENST00000613670 USP9XQ93008 2570 aaPredicted RBP9.64□□□□□ -0.87
LIG1-221ENST00000613670 DMXL2Q8TDJ6 3036 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 SNCGO76070 127 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 PMVKQ15126 192 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 TTC32Q5I0X7 151 aa9.64□□□□□ -0.87
LIG1-221ENST00000613670 SPANXB1Q9NS25 103 aaPredicted RBP9.64□□□□□ -0.87
LIG1-221ENST00000613670 IGHV3OR16-12A0A075B7B8 117 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 COX6CP09669 75 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 ATP5J2P56134 94 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 BAALCQ8WXS3 180 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 ZNF48Q96MX3 618 aaPredicted RBP9.63□□□□□ -0.87
LIG1-221ENST00000613670 ANAPC13Q9BS18 74 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 KLK9Q9UKQ9 250 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 CENPVL3A0A0U1RRI6 287 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 RPL13AP40429 203 aaKnown RBP9.63□□□□□ -0.87
LIG1-221ENST00000613670 ZFP2Q6ZN57 461 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 PLEKHB2Q96CS7 222 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 TEX29Q8N6K0 151 aa9.63□□□□□ -0.87
LIG1-221ENST00000613670 CFAP47Q6ZTR5 3102 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 C11orf86A6NJI1 115 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 K7ENP7 123 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 ODF3BA8MYP8 253 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 CD28P10747 220 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 ZFAND3Q9H8U3 227 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 SPINK13Q1W4C9 94 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 C9orf47Q6ZRZ4 202 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 NRACQ8N912 160 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 RASL10AQ92737 203 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 TNFRSF18Q9Y5U5 241 aa9.62□□□□□ -0.87
LIG1-221ENST00000613670 KNCNA6PVL3 124 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 IGF2-ASQ6U949 168 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 KALRNO60229 2985 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 RNASE13Q5GAN3 156 aaKnown RBP9.61□□□□□ -0.87
LIG1-221ENST00000613670 PRR9Q5T870 116 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 TACC2O95359 2948 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 J3QQQ9 107 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 ASPMQ8IZT6 3477 aa9.61□□□□□ -0.87
LIG1-221ENST00000613670 MAP1AP78559 2803 aaPredicted RBP9.6□□□□□ -0.87
LIG1-221ENST00000613670 FAM223BA6NKX1 122 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 IGHG4P01861 327 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 FAM223AQ8IWN6 122 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 PPDPFLQ8WWR9 84 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 PIMREGQ9BSJ6 248 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 PRO1854Q9UHT4 67 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 TOMM6Q96B49 74 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 C20orf173Q96LM9 149 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 OPRPNQ99935 248 aaPredicted RBP9.6□□□□□ -0.87
LIG1-221ENST00000613670 DAZ1Q9NQZ3 744 aaKnown RBP9.6□□□□□ -0.87
LIG1-221ENST00000613670 IGHV7-4-1A0A0J9YVY3 117 aa9.6□□□□□ -0.87
LIG1-221ENST00000613670 MUC3AQ02505 3323 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 FOXI1Q12951 378 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 BLCAPP62952 87 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 CDSNQ15517 529 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 DMDP11532 3685 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 SONP18583 2426 aaKnown RBP9.59□□□□□ -0.87
LIG1-221ENST00000613670 TRAV12-1A0A0B4J245 112 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 C1QTNF4Q9BXJ3 329 aa9.59□□□□□ -0.87
LIG1-221ENST00000613670 SRSF2Q01130 221 aaKnown RBP9.58□□□□□ -0.88
LIG1-221ENST00000613670 TCF15Q12870 199 aa9.58□□□□□ -0.88
LIG1-221ENST00000613670 ZFAND6Q6FIF0 208 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms