RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	GAGE5	Q13069	117 aa		11.77	□□□□□ -0.53
SHKBP1-223	ENST00000600552	GAGE13	Q4V321	117 aa		11.77	□□□□□ -0.53
SHKBP1-223	ENST00000600552	LELP1	Q5T871	98 aa		11.77	□□□□□ -0.53
SHKBP1-223	ENST00000600552	OR2G3	Q8NGZ4	309 aa		11.77	□□□□□ -0.53
SHKBP1-223	ENST00000600552	LINC00479	Q96M42	142 aa		11.77	□□□□□ -0.53
SHKBP1-223	ENST00000600552	C9orf85	Q96MD7	179 aa		11.77	□□□□□ -0.53
SHKBP1-223	ENST00000600552	GGTLC3	B5MD39	225 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	FAM229A	H3BQW9	127 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	CXorf1	O96002	111 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	IFNA7	P01567	189 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	IGLV2-11	P01706	119 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	MB	P02144	154 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	UBE2G2	P60604	165 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552		Q8N3U1	123 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	CYB561D1	Q8N8Q1	229 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	OR2T35	Q8NGX2	323 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	GTSF1L	Q9H1H1	148 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	MED28	Q9H204	178 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	TMEM167B	Q9NRX6	74 aa		11.76	□□□□□ -0.53
SHKBP1-223	ENST00000600552	VPS13B	Q7Z7G8	4022 aa		11.75	□□□□□ -0.53
SHKBP1-223	ENST00000600552	RNASE3	P12724	160 aa	Known RBP	11.75	□□□□□ -0.53
SHKBP1-223	ENST00000600552		Q6ZSN1	163 aa		11.75	□□□□□ -0.53
SHKBP1-223	ENST00000600552		Q8N814	137 aa		11.75	□□□□□ -0.53
SHKBP1-223	ENST00000600552	PSMG3	Q9BT73	122 aa	Predicted RBP	11.75	□□□□□ -0.53
SHKBP1-223	ENST00000600552	LECT2	O14960	151 aa		11.74	□□□□□ -0.53
SHKBP1-223	ENST00000600552	CIDEA	O60543	219 aa		11.74	□□□□□ -0.53
SHKBP1-223	ENST00000600552	MGST1	P10620	155 aa	Known RBP	11.74	□□□□□ -0.53
SHKBP1-223	ENST00000600552		Q5BKY6	102 aa		11.74	□□□□□ -0.53
SHKBP1-223	ENST00000600552	SAPCD1	Q5SSQ6	148 aa		11.74	□□□□□ -0.53
SHKBP1-223	ENST00000600552	NTN5	Q8WTR8	489 aa	Predicted RBP	11.74	□□□□□ -0.53
SHKBP1-223	ENST00000600552	SERF2	P84101	59 aa		11.73	□□□□□ -0.53
SHKBP1-223	ENST00000600552	FLG2	Q5D862	2391 aa	Predicted RBP	11.73	□□□□□ -0.53
SHKBP1-223	ENST00000600552	SUN5	Q8TC36	379 aa		11.73	□□□□□ -0.53
SHKBP1-223	ENST00000600552	AQP10	Q96PS8	301 aa		11.73	□□□□□ -0.53
SHKBP1-223	ENST00000600552	JPT2	Q9H910	190 aa		11.73	□□□□□ -0.53
SHKBP1-223	ENST00000600552	DMBT1	Q9UGM3	2413 aa	Predicted RBP	11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	HERC1	Q15751	4861 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	IGKV3D-20	A0A0C4DH25	116 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	ASIP	P42127	132 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	RPL7L1	Q6DKI1	246 aa	Known RBP	11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	INO80E	Q8NBZ0	244 aa	Predicted RBP	11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	TM2D2	Q9BX73	214 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	PARL	Q9H300	379 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	TNFSF18	Q9UNG2	199 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	ARL2-SNX15	V9GYD0	113 aa		11.72	□□□□□ -0.53
SHKBP1-223	ENST00000600552	FXYD6-FXYD2	A0A087WZ82	144 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	FABP5P3	A8MUU1	101 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	FGF8	P55075	233 aa	Predicted RBP	11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	TMEM70	Q9BUB7	260 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	SAMD10	Q9BYL1	202 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	FAM30A	Q9NZY2	134 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552		Q9UF83	564 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	BOLA1	Q9Y3E2	137 aa		11.71	□□□□□ -0.53
SHKBP1-223	ENST00000600552	BORCS7-ASMT	A0A0B4J1R7	106 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	GRIFIN	A4D1Z8	144 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552		A8MWV9	139 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552		B4DEV8	164 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552		H3BVH4	76 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552		M0R036	132 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	WFDC2	Q14508	124 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	DAZ4	Q86SG3	579 aa	Known RBP	11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	C14orf178	Q8N769	122 aa	Predicted RBP	11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	PTH2	Q96A98	100 aa		11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	DAZ3	Q9NR90	486 aa	Known RBP	11.7	□□□□□ -0.54
SHKBP1-223	ENST00000600552	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.69	□□□□□ -0.54
SHKBP1-223	ENST00000600552		A0A1W2PRE2	83 aa		11.69	□□□□□ -0.54
SHKBP1-223	ENST00000600552	PEX7	O00628	323 aa		11.69	□□□□□ -0.54
SHKBP1-223	ENST00000600552	FAM74A4	Q5TZK3	123 aa		11.69	□□□□□ -0.54
SHKBP1-223	ENST00000600552	TMSB15B	A0A087X1C1	80 aa		11.68	□□□□□ -0.54
SHKBP1-223	ENST00000600552	ZNF726P1	Q15940	193 aa		11.68	□□□□□ -0.54
SHKBP1-223	ENST00000600552	DMRTA1	Q5VZB9	504 aa		11.68	□□□□□ -0.54
SHKBP1-223	ENST00000600552	ZFP2	Q6ZN57	461 aa		11.68	□□□□□ -0.54
SHKBP1-223	ENST00000600552	BAALC	Q8WXS3	180 aa		11.68	□□□□□ -0.54
SHKBP1-223	ENST00000600552	SRRM2	Q9UQ35	2752 aa	Known RBP	11.68	□□□□□ -0.54
SHKBP1-223	ENST00000600552	CTXND1	A0A1B0GTU2	59 aa		11.67	□□□□□ -0.54
SHKBP1-223	ENST00000600552	ARMS2	P0C7Q2	107 aa		11.67	□□□□□ -0.54
SHKBP1-223	ENST00000600552		Q86TA4	180 aa		11.67	□□□□□ -0.54
SHKBP1-223	ENST00000600552	SYT8	Q8NBV8	401 aa		11.67	□□□□□ -0.54
SHKBP1-223	ENST00000600552	URGCP-MRPS24	S4R325	110 aa		11.67	□□□□□ -0.54
SHKBP1-223	ENST00000600552		A0A087WWL8	130 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	TRAV8-3	A0A0A6YYJ7	113 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	LAGE3	Q14657	143 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	LINC01620	Q4KN68	170 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	AKR1C8P	Q5T2L2	129 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	OR11H4	Q8NGC9	324 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	ZC2HC1A	Q96GY0	325 aa		11.66	□□□□□ -0.54
SHKBP1-223	ENST00000600552	FAM74A7	A6NL05	159 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552		M0R381	172 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	SH2D1A	O60880	128 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	PTTG1	O95997	202 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	GIP	P09681	153 aa	Predicted RBP	11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	CRIP1	P50238	77 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	TOR2A	Q5JU69	321 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	IL36B	Q9NZH7	164 aa		11.65	□□□□□ -0.54
SHKBP1-223	ENST00000600552	IGKV2D-24	A0A075B6R9	120 aa		11.64	□□□□□ -0.55
SHKBP1-223	ENST00000600552	RNF222	A6NCQ9	220 aa		11.64	□□□□□ -0.55
SHKBP1-223	ENST00000600552	KRBOX1	C9JBD0	128 aa		11.64	□□□□□ -0.55
SHKBP1-223	ENST00000600552	UBE2G1	P62253	170 aa		11.64	□□□□□ -0.55
SHKBP1-223	ENST00000600552	DNAJC30	Q96LL9	226 aa		11.64	□□□□□ -0.55
SHKBP1-223	ENST00000600552	PHLDA3	Q9Y5J5	127 aa		11.64	□□□□□ -0.55

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