RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 F8W1H4 67 aa7.62□□□□□ -1.19
LIG3-216ENST00000593099 DAD1P61803 113 aa7.62□□□□□ -1.19
LIG3-216ENST00000593099 ATXN8Q156A1 80 aa7.62□□□□□ -1.19
LIG3-216ENST00000593099 FAM19A2Q8N3H0 131 aa7.62□□□□□ -1.19
LIG3-216ENST00000593099 CIRBPQ14011 172 aaKnown RBP7.62□□□□□ -1.19
LIG3-216ENST00000593099 VWC2Q2TAL6 325 aa7.62□□□□□ -1.19
LIG3-216ENST00000593099 IGHV3-53P01767 116 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 TMEM75Q8N9X5 138 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 LINC01006Q8NI28 216 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 LY96Q9Y6Y9 160 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 SETD2Q9BYW2 2564 aaPredicted RBP7.61□□□□□ -1.19
LIG3-216ENST00000593099 CCL25O15444 150 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 FAM90A2PQ658T7 463 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 C1orf229Q6ZS94 237 aaPredicted RBP7.61□□□□□ -1.19
LIG3-216ENST00000593099 ATP5L2Q7Z4Y8 100 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 RPL36AP83881 106 aaKnown RBP7.61□□□□□ -1.19
LIG3-216ENST00000593099 RPL36ALQ969Q0 106 aaKnown RBP7.61□□□□□ -1.19
LIG3-216ENST00000593099 LAMTOR3Q9UHA4 124 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 FN1P02751 2386 aaKnown RBP7.61□□□□□ -1.19
LIG3-216ENST00000593099 IGHV1OR15-1A0A075B7D0 117 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 NCR2O95944 276 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 LINC01551Q86U37 167 aa7.61□□□□□ -1.19
LIG3-216ENST00000593099 WIPF2Q8TF74 440 aaPredicted RBP7.6□□□□□ -1.19
LIG3-216ENST00000593099 LINC00479Q96M42 142 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 HECTD1Q9ULT8 2610 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 K7EP34 96 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 BUB3O43684 328 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 BRWD1-AS2P59051 145 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 FXYD5Q96DB9 178 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 ACANP16112 2415 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 NPC2P61916 151 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 SRSF3P84103 164 aaKnown RBP7.6□□□□□ -1.19
LIG3-216ENST00000593099 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.6□□□□□ -1.19
LIG3-216ENST00000593099 MRPL53Q96EL3 112 aaKnown RBP7.6□□□□□ -1.19
LIG3-216ENST00000593099 CRYGBP07316 175 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 C18orf15Q96N68 181 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 ZNF702PQ9H963 129 aa7.6□□□□□ -1.19
LIG3-216ENST00000593099 PFN1P07737 140 aaKnown RBP7.59□□□□□ -1.19
LIG3-216ENST00000593099 P0C879 139 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 C2orf82Q6UX34 121 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 CHCHD5Q9BSY4 110 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 KLK9Q9UKQ9 250 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 TRAV12-2A0A075B6T6 113 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 C9JAW5 83 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 TRBV12-3P01733 135 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 ZNF876PQ49A33 203 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 Q8N6K4 173 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 PRR25Q96S07 402 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 SMAD5-AS1Q9Y6J3 95 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 A0A087X0K7 114 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 ARMS2P0C7Q2 107 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 LYZL1Q6UWQ5 148 aa7.59□□□□□ -1.19
LIG3-216ENST00000593099 ZNF292O60281 2723 aa7.59□□□□□ -1.2
LIG3-216ENST00000593099 C5orf42Q9H799 3197 aa7.59□□□□□ -1.2
LIG3-216ENST00000593099 A0A087WX48 190 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 TRAV13-1A0A0B4J241 112 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 IGHV3-73A0A0B4J1V6 119 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 GGTLC3B5MD39 225 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 EIF4EBP1Q13541 118 aaPredicted RBP7.58□□□□□ -1.2
LIG3-216ENST00000593099 TMEM170BQ5T4T1 132 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 APRG1Q8IVJ8 170 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 IMMP2LQ96T52 175 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 F6UB75 175 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 RHODO00212 210 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 DPH3P1Q9H4G8 78 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 PCSK5Q92824 1860 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 WI2-2373I1.2A0A1W2PRP0 233 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 TMEM61Q8N0U2 210 aa7.58□□□□□ -1.2
LIG3-216ENST00000593099 C9orf118A6NHY6 69 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 H3BRM9 83 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 RPL32P62910 135 aaKnown RBP7.57□□□□□ -1.2
LIG3-216ENST00000593099 ZNF726P1Q15940 193 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 PIFOQ8TCI5 191 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 RNF183Q96D59 192 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 C17orf77Q96MU5 243 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 MRPL36Q9P0J6 103 aaKnown RBP7.57□□□□□ -1.2
LIG3-216ENST00000593099 HLA-DMBP28068 263 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 ADMP35318 185 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 UNQ9165/PRO28630Q6UXU0 137 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 TMEM256Q8N2U0 113 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 CCDC140Q96MF4 163 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 LENEPQ9Y5L5 61 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 NDUFA7O95182 113 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 DPH3Q96FX2 82 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 CRPP02741 224 aa7.57□□□□□ -1.2
LIG3-216ENST00000593099 APOHP02749 345 aaPredicted RBP7.57□□□□□ -1.2
LIG3-216ENST00000593099 SUMO2P61956 95 aaKnown RBP7.56□□□□□ -1.2
LIG3-216ENST00000593099 VGLL1Q99990 258 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 AGPAT4-IT1Q9H0P7 198 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 ZNF492Q9P255 531 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 CT83Q5H943 113 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 C14orf178Q8N769 122 aaPredicted RBP7.56□□□□□ -1.2
LIG3-216ENST00000593099 TMEM243Q9BU79 118 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 F8P00451 2351 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 PLXNB1O43157 2135 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 PATE2Q6UY27 113 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 C15orf53Q8NAA6 179 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 C8orf49Q96NF6 230 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 SCGB3A1Q96QR1 104 aa7.56□□□□□ -1.2
LIG3-216ENST00000593099 PYGO2Q9BRQ0 406 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms