RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 KRTAP29-1A8MX34 341 aaPredicted RBP7.75□□□□□ -1.17
CLIP3-204ENST00000590559 HMGB3O15347 200 aaKnown RBP7.75□□□□□ -1.17
CLIP3-204ENST00000590559 GCGP01275 180 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 PIK3CD-AS1Q5SR53 167 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 UFSP1Q6NVU6 142 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 ZFP2Q6ZN57 461 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 C5orf17Q8NAS9 161 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 OR10G9Q8NGN4 311 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 OR10G7Q8NGN6 311 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 OR2G3Q8NGZ4 309 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 ATP6V0E2Q8NHE4 81 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 Q9UF83 564 aa7.75□□□□□ -1.17
CLIP3-204ENST00000590559 KRTAP10-4P60372 401 aaPredicted RBP7.74□□□□□ -1.17
CLIP3-204ENST00000590559 LINC00479Q96M42 142 aa7.74□□□□□ -1.17
CLIP3-204ENST00000590559 TM2D2Q9BX73 214 aa7.74□□□□□ -1.17
CLIP3-204ENST00000590559 PARLQ9H300 379 aa7.74□□□□□ -1.17
CLIP3-204ENST00000590559 PSG8Q9UQ74 426 aa7.74□□□□□ -1.17
CLIP3-204ENST00000590559 IGKV3D-20A0A0C4DH25 116 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 GGTLC3B5MD39 225 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 GCHFRP30047 84 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 CDC34P49427 236 aaPredicted RBP7.73□□□□□ -1.17
CLIP3-204ENST00000590559 FLI1Q01543 452 aaPredicted RBP7.73□□□□□ -1.17
CLIP3-204ENST00000590559 SMUG1Q53HV7 270 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 RAB24Q969Q5 203 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 NDFIP1Q9BT67 221 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 EPDR1Q9UM22 224 aa7.73□□□□□ -1.17
CLIP3-204ENST00000590559 TRAV8-3A0A0A6YYJ7 113 aa7.72□□□□□ -1.17
CLIP3-204ENST00000590559 SSNA1O43805 119 aa7.72□□□□□ -1.17
CLIP3-204ENST00000590559 SUMO1P63165 101 aaKnown RBP7.72□□□□□ -1.17
CLIP3-204ENST00000590559 DAZ4Q86SG3 579 aaKnown RBP7.72□□□□□ -1.17
CLIP3-204ENST00000590559 LINC00528Q8N1L1 170 aa7.72□□□□□ -1.17
CLIP3-204ENST00000590559 PSMG3Q9BT73 122 aaPredicted RBP7.72□□□□□ -1.17
CLIP3-204ENST00000590559 DAZ3Q9NR90 486 aaKnown RBP7.72□□□□□ -1.17
CLIP3-204ENST00000590559 A8MWV9 139 aa7.71□□□□□ -1.18
CLIP3-204ENST00000590559 K7EQM0 130 aa7.71□□□□□ -1.18
CLIP3-204ENST00000590559 PLA2G1BP04054 148 aaKnown RBP7.71□□□□□ -1.18
CLIP3-204ENST00000590559 DNLZQ5SXM8 178 aa7.71□□□□□ -1.18
CLIP3-204ENST00000590559 PRNTQ86SH4 94 aa7.71□□□□□ -1.18
CLIP3-204ENST00000590559 CYB561D1Q8N8Q1 229 aa7.71□□□□□ -1.18
CLIP3-204ENST00000590559 JPT2Q9H910 190 aa7.71□□□□□ -1.18
CLIP3-204ENST00000590559 RNF222A6NCQ9 220 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 GAGE12JA6NER3 117 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 J3QL48 77 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 ATP6V0CP27449 155 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 SERF2P84101 59 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 GAGE1Q13065 139 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 GAGE4Q13068 117 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 GAGE5Q13069 117 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 GAGE13Q4V321 117 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 SAPCD1Q5SSQ6 148 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 C14orf178Q8N769 122 aaPredicted RBP7.7□□□□□ -1.18
CLIP3-204ENST00000590559 DEFB104AQ8WTQ1 72 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 DNAJC30Q96LL9 226 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 SAMD10Q9BYL1 202 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 SH3BGRL3Q9H299 93 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 IL36BQ9NZH7 164 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 UBR4Q5T4S7 5183 aa7.7□□□□□ -1.18
CLIP3-204ENST00000590559 A0A087WWC5 75 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 A0A1W2PRE2 83 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 LECT2O14960 151 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 CXorf1O96002 111 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 CRIP1P50238 77 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 ZFP69Q49AA0 526 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 SCXQ7RTU7 201 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 COX8CQ7Z4L0 72 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 NIT1Q86X76 327 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 HSD17B11Q8NBQ5 300 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 BAALCQ8WXS3 180 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 AQP10Q96PS8 301 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 TMEM167BQ9NRX6 74 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 COX11Q9Y6N1 276 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 ARL2-SNX15V9GYD0 113 aa7.69□□□□□ -1.18
CLIP3-204ENST00000590559 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.68□□□□□ -1.18
CLIP3-204ENST00000590559 A6NHS1 94 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 FABP5P3A8MUU1 101 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 MBP02144 154 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 ZNF726P1Q15940 193 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 LINC01620Q4KN68 170 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 TOR2AQ5JU69 321 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 DMRTA1Q5VZB9 504 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 ATRAIDQ6UW56 229 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 OR2T35Q8NGX2 323 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 TNFSF18Q9UNG2 199 aa7.68□□□□□ -1.18
CLIP3-204ENST00000590559 TRAV34A0A0B4J273 112 aa7.67□□□□□ -1.18
CLIP3-204ENST00000590559 KRBOX1C9JBD0 128 aa7.67□□□□□ -1.18
CLIP3-204ENST00000590559 FGF8P55075 233 aaPredicted RBP7.67□□□□□ -1.18
CLIP3-204ENST00000590559 CHAC1Q9BUX1 264 aa7.67□□□□□ -1.18
CLIP3-204ENST00000590559 ASIPP42127 132 aa7.66□□□□□ -1.18
CLIP3-204ENST00000590559 LGALSLQ3ZCW2 172 aaPredicted RBP7.66□□□□□ -1.18
CLIP3-204ENST00000590559 Q8N976 141 aa7.66□□□□□ -1.18
CLIP3-204ENST00000590559 SFRP2Q96HF1 295 aa7.66□□□□□ -1.18
CLIP3-204ENST00000590559 ACTR3CQ9C0K3 210 aaPredicted RBP7.66□□□□□ -1.18
CLIP3-204ENST00000590559 ALG5Q9Y673 324 aa7.66□□□□□ -1.18
CLIP3-204ENST00000590559 H3BVH4 76 aa7.65□□□□□ -1.18
CLIP3-204ENST00000590559 RHODO00212 210 aa7.65□□□□□ -1.18
CLIP3-204ENST00000590559 ARMS2P0C7Q2 107 aa7.65□□□□□ -1.18
CLIP3-204ENST00000590559 S100A4P26447 101 aaKnown RBP7.65□□□□□ -1.18
CLIP3-204ENST00000590559 DEFA1P59665 94 aa7.65□□□□□ -1.18
CLIP3-204ENST00000590559 DEFA3P59666 94 aa7.65□□□□□ -1.18
CLIP3-204ENST00000590559 Q5BKY6 102 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms