RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 LYPD6BQ8NI32 183 aa13.4□□□□□ -0.26
SS18-208ENST00000577751 DERL1Q9BUN8 251 aa13.4□□□□□ -0.26
SS18-208ENST00000577751 VAX2Q9UIW0 290 aa13.4□□□□□ -0.26
SS18-208ENST00000577751 C9JCJ5 164 aa13.39□□□□□ -0.27
SS18-208ENST00000577751 M0R036 132 aa13.39□□□□□ -0.27
SS18-208ENST00000577751 PDE6DO43924 150 aa13.39□□□□□ -0.27
SS18-208ENST00000577751 S100A4P26447 101 aaKnown RBP13.39□□□□□ -0.27
SS18-208ENST00000577751 ZNF506Q5JVG8 444 aa13.39□□□□□ -0.27
SS18-208ENST00000577751 RS1O15537 224 aa13.38□□□□□ -0.27
SS18-208ENST00000577751 ESRGQ1W209 222 aa13.38□□□□□ -0.27
SS18-208ENST00000577751 PIK3CD-AS1Q5SR53 167 aa13.38□□□□□ -0.27
SS18-208ENST00000577751 ZNRF2Q8NHG8 242 aa13.38□□□□□ -0.27
SS18-208ENST00000577751 CIDEAO60543 219 aa13.37□□□□□ -0.27
SS18-208ENST00000577751 CFAP126Q5VTH2 177 aa13.37□□□□□ -0.27
SS18-208ENST00000577751 ICOSQ9Y6W8 199 aa13.37□□□□□ -0.27
SS18-208ENST00000577751 IGLV2-18A0A075B6J9 118 aa13.36□□□□□ -0.27
SS18-208ENST00000577751 GRIFINA4D1Z8 144 aa13.36□□□□□ -0.27
SS18-208ENST00000577751 ARMS2P0C7Q2 107 aa13.36□□□□□ -0.27
SS18-208ENST00000577751 Q6ZR54 194 aa13.36□□□□□ -0.27
SS18-208ENST00000577751 SCRT2Q9NQ03 307 aa13.36□□□□□ -0.27
SS18-208ENST00000577751 H3BVH4 76 aa13.35□□□□□ -0.27
SS18-208ENST00000577751 IGLV2-8P01709 118 aa13.35□□□□□ -0.27
SS18-208ENST00000577751 GATA1P15976 413 aaPredicted RBP13.35□□□□□ -0.27
SS18-208ENST00000577751 MRPL23Q16540 153 aaKnown RBP13.35□□□□□ -0.27
SS18-208ENST00000577751 CENPWQ5EE01 88 aa13.35□□□□□ -0.27
SS18-208ENST00000577751 SMIM12Q96EX1 92 aa13.35□□□□□ -0.27
SS18-208ENST00000577751 UPK3BQ9BT76 320 aa13.35□□□□□ -0.27
SS18-208ENST00000577751 MED9Q9NWA0 146 aa13.35□□□□□ -0.27
SS18-208ENST00000577751 TMSB15BA0A087X1C1 80 aa13.34□□□□□ -0.27
SS18-208ENST00000577751 RAB19A4D1S5 217 aa13.34□□□□□ -0.27
SS18-208ENST00000577751 M0R2N4 97 aa13.34□□□□□ -0.27
SS18-208ENST00000577751 CXCL1P09341 107 aa13.34□□□□□ -0.27
SS18-208ENST00000577751 K7EQD1 137 aa13.33□□□□□ -0.28
SS18-208ENST00000577751 DMRTA1Q5VZB9 504 aa13.33□□□□□ -0.28
SS18-208ENST00000577751 MRPS16Q9Y3D3 137 aaKnown RBP13.33□□□□□ -0.28
SS18-208ENST00000577751 TRBV20OR9-2A0A075B6H5 130 aa13.32□□□□□ -0.28
SS18-208ENST00000577751 A8MWV9 139 aa13.32□□□□□ -0.28
SS18-208ENST00000577751 MED14OSP0DP75 135 aa13.32□□□□□ -0.28
SS18-208ENST00000577751 GYPEP15421 78 aa13.32□□□□□ -0.28
SS18-208ENST00000577751 RPL19P84098 196 aaKnown RBP13.32□□□□□ -0.28
SS18-208ENST00000577751 PRR27Q6MZM9 219 aa13.32□□□□□ -0.28
SS18-208ENST00000577751 TRBV6-4A0A1B0GX49 114 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 RBFOX3A6NFN3 312 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 GNG4P50150 75 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 ZFP2Q6ZN57 461 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 NEGR1Q7Z3B1 354 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 SLC25A29Q8N8R3 303 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 PARLQ9H300 379 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 Q9H8V8 135 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 PHLDA3Q9Y5J5 127 aa13.31□□□□□ -0.28
SS18-208ENST00000577751 UFSP1Q6NVU6 142 aa13.3□□□□□ -0.28
SS18-208ENST00000577751 LYPD5Q6UWN5 251 aa13.3□□□□□ -0.28
SS18-208ENST00000577751 SYT8Q8NBV8 401 aa13.3□□□□□ -0.28
SS18-208ENST00000577751 SSBP4Q9BWG4 385 aaPredicted RBP13.3□□□□□ -0.28
SS18-208ENST00000577751 JPT2Q9H910 190 aa13.3□□□□□ -0.28
SS18-208ENST00000577751 FRAS1Q86XX4 4008 aa13.3□□□□□ -0.28
SS18-208ENST00000577751 IGHV3-73A0A0B4J1V6 119 aa13.29□□□□□ -0.28
SS18-208ENST00000577751 LOC100131303A0A0U1RQF7 123 aa13.29□□□□□ -0.28
SS18-208ENST00000577751 NBDYA0A0U1RRE5 68 aa13.29□□□□□ -0.28
SS18-208ENST00000577751 C19orf71A6NCJ1 209 aa13.29□□□□□ -0.28
SS18-208ENST00000577751 MGST1P10620 155 aaKnown RBP13.29□□□□□ -0.28
SS18-208ENST00000577751 SRIP30626 198 aa13.29□□□□□ -0.28
SS18-208ENST00000577751 PCNPQ8WW12 178 aaKnown RBP13.29□□□□□ -0.28
SS18-208ENST00000577751 EPPK1P58107 5090 aaKnown RBP13.28□□□□□ -0.28
SS18-208ENST00000577751 TMEM250H0YL14 139 aa13.28□□□□□ -0.28
SS18-208ENST00000577751 SNAI2O43623 268 aa13.28□□□□□ -0.28
SS18-208ENST00000577751 Q6ZSN1 163 aa13.28□□□□□ -0.28
SS18-208ENST00000577751 SAMD10Q9BYL1 202 aa13.28□□□□□ -0.28
SS18-208ENST00000577751 DNAH10Q8IVF4 4471 aa13.27□□□□□ -0.28
SS18-208ENST00000577751 RTL8CO15255 209 aa13.27□□□□□ -0.29
SS18-208ENST00000577751 NDUFS6O75380 124 aaKnown RBP13.27□□□□□ -0.29
SS18-208ENST00000577751 RHOHQ15669 191 aa13.27□□□□□ -0.29
SS18-208ENST00000577751 TEX261Q6UWH6 196 aa13.27□□□□□ -0.29
SS18-208ENST00000577751 ZFP82Q8N141 532 aa13.27□□□□□ -0.29
SS18-208ENST00000577751 SFRP2Q96HF1 295 aa13.27□□□□□ -0.29
SS18-208ENST00000577751 PRADC1Q9BSG0 188 aa13.27□□□□□ -0.29
SS18-208ENST00000577751 M0R381 172 aa13.26□□□□□ -0.29
SS18-208ENST00000577751 NXPH4O95158 308 aa13.26□□□□□ -0.29
SS18-208ENST00000577751 OR5AL1P0C617 328 aa13.26□□□□□ -0.29
SS18-208ENST00000577751 SH2D6Q7Z4S9 175 aa13.26□□□□□ -0.29
SS18-208ENST00000577751 FAM210AQ96ND0 272 aa13.26□□□□□ -0.29
SS18-208ENST00000577751 BIN3Q9NQY0 253 aa13.26□□□□□ -0.29
SS18-208ENST00000577751 RHODO00212 210 aa13.25□□□□□ -0.29
SS18-208ENST00000577751 CRYGDP07320 174 aa13.25□□□□□ -0.29
SS18-208ENST00000577751 TOR2AQ5JU69 321 aa13.25□□□□□ -0.29
SS18-208ENST00000577751 LINC00336Q6ZUF6 198 aa13.25□□□□□ -0.29
SS18-208ENST00000577751 OR10AG1Q8NH19 301 aa13.25□□□□□ -0.29
SS18-208ENST00000577751 OCC1Q8TAD7 63 aa13.25□□□□□ -0.29
SS18-208ENST00000577751 DAZAP1Q96EP5 407 aaKnown RBP13.25□□□□□ -0.29
SS18-208ENST00000577751 DNAH2Q9P225 4427 aa13.24□□□□□ -0.29
SS18-208ENST00000577751 EIF5A2Q9GZV4 153 aaKnown RBP13.24□□□□□ -0.29
SS18-208ENST00000577751 SIVA1O15304 175 aa13.23□□□□□ -0.29
SS18-208ENST00000577751 IGLC6P0CF74 106 aa13.23□□□□□ -0.29
SS18-208ENST00000577751 TIRAPP58753 221 aa13.23□□□□□ -0.29
SS18-208ENST00000577751 RPS20P60866 119 aaKnown RBP13.23□□□□□ -0.29
SS18-208ENST00000577751 C1orf134Q5TEV5 83 aa13.23□□□□□ -0.29
SS18-208ENST00000577751 OR2D3Q8NGH3 330 aa13.23□□□□□ -0.29
SS18-208ENST00000577751 KRTAP1-5Q9BYS1 174 aa13.23□□□□□ -0.29
SS18-208ENST00000577751 A0A087WWL8 130 aa13.22□□□□□ -0.29
SS18-208ENST00000577751 A0A1W2PPQ1 181 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms