RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 PCBD1P61457 104 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 HIST1H4AP62805 103 aaKnown RBP2.2□□□□□ -2.06
NUP88-209ENST00000574855 TMEM155Q4W5P6 130 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 C10orf91Q5T1B1 145 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 MRPL54Q6P161 138 aaKnown RBP2.2□□□□□ -2.06
NUP88-209ENST00000574855 ZFP2Q6ZN57 461 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 C7orf65Q6ZTY9 151 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 MIR17HGQ75NE6 70 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 HIST3H2BBQ8N257 126 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 KCNRGQ8N5I3 272 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 C3orf56Q8N813 242 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 CNEP1R1Q8N9A8 125 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 HIST1H2BLQ99880 126 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 SPANXDQ9BXN6 97 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 SEC11CQ9BY50 192 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 AGPAT4-IT1Q9H0P7 198 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 CST11Q9H112 138 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 XAGE1AQ9HD64 81 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 TAS2R4Q9NYW5 299 aa2.2□□□□□ -2.06
NUP88-209ENST00000574855 CHCHD2Q9Y6H1 151 aaPredicted RBP2.2□□□□□ -2.06
NUP88-209ENST00000574855 F5P12259 2224 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 GOLGA4Q13439 2230 aaKnown RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 DOCK9Q9BZ29 2069 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 UTRNP46939 3433 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 FXYD6-FXYD2A0A087WZ82 144 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 TRGV10A0A0A0MS01 117 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 PIGBOS1A0A0B4J2F0 54 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 IGHV1-3A0A0C4DH29 117 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 IGHV3-64DA0A0J9YX35 117 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 KANTRA0A1W2PQU2 76 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 TMEM223A0PJW6 202 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 PINLYPA6NC86 204 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 C19orf71A6NCJ1 209 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 TMEM14DPA8MWL7 114 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 MCRIP1C9JLW8 97 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 GEMIN2O14893 280 aaKnown RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 RER1O15258 196 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 HRASP01112 189 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 IGHV1-46P01743 117 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 IGHV3-7P01780 117 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 CD3DP04234 171 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 RPS27P42677 84 aaKnown RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 FXYD7P58549 80 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 UBA52P62987 128 aaKnown RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 ZNF90Q03938 601 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 LGALSLQ3ZCW2 172 aaPredicted RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 C2orf83Q53S99 150 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 CLLU1Q5K131 121 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 C10orf128Q5T292 105 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 FAM27BQ5VT28 67 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 EIF5AL1Q6IS14 154 aaKnown RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 PATE2Q6UY27 113 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 SOSTDC1Q6X4U4 206 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 ZNF705AQ6ZN79 300 aaPredicted RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 ATOH7Q8N100 152 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 DIRC1Q969H9 104 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 IMMP1LQ96LU5 166 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 AMELYQ99218 206 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 FXYD6Q9H0Q3 95 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 PRO3102Q9H379 93 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 NAA60Q9H7X0 242 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 FKBP11Q9NYL4 201 aa2.19□□□□□ -2.06
NUP88-209ENST00000574855 NOP16Q9Y3C1 178 aaKnown RBP2.19□□□□□ -2.06
NUP88-209ENST00000574855 COL4A2P08572 1712 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 TRBV20-1A0A075B6N2 111 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 MDFIC2A0A1B0GVS7 189 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 A6NDX4 124 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 TMEM235A6NFC5 223 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 C11orf94C9JXX5 98 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 C3orf84H3BNL1 204 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 H3BSH0 61 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 M0R135 149 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SLC25A20O43772 301 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SH2D1AO60880 128 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 MRPL33O75394 65 aaKnown RBP2.18□□□□□ -2.06
NUP88-209ENST00000574855 IGHV1-69P01742 117 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 COX6A1P12074 109 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SLC25A4P12235 298 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 CCL4P13236 92 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SLC25A16P16260 332 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 Q56UQ5 140 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 Q5BKY6 102 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 C9orf129Q5T035 196 aaKnown RBP2.18□□□□□ -2.06
NUP88-209ENST00000574855 C9orf153Q5TBE3 101 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 Q6ZUT4 128 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SVBPQ8N300 66 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SIGLECL1Q8N7X8 197 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 Q8N9W7 124 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 CLDND2Q8NHS1 167 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 LINC01560Q8TB33 94 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 AQP3Q92482 292 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 RBMXL1Q96E39 390 aaKnown RBP2.18□□□□□ -2.06
NUP88-209ENST00000574855 MRPS24Q96EL2 167 aaKnown RBP2.18□□□□□ -2.06
NUP88-209ENST00000574855 LINC00526Q96FQ7 95 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 ZNF714Q96N38 554 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SCGB3A1Q96QR1 104 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 SLC35B3Q9H1N7 401 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 LINC00574Q9H8X3 128 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 MED9Q9NWA0 146 aa2.18□□□□□ -2.06
NUP88-209ENST00000574855 LHFPL6Q9Y693 200 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms