RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 FXYD5Q96DB9 178 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 ANAPC13Q9BS18 74 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 SCRT2Q9NQ03 307 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 C21orf62Q9NYP8 219 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 SMAD5-AS1Q9Y6J3 95 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 V9GYH0 126 aa4.34□□□□□ -1.71
VPS53-212ENST00000572259 PRKDCP78527 4128 aaKnown RBP4.34□□□□□ -1.71
VPS53-212ENST00000572259 DNAH3Q8TD57 4116 aa4.34□□□□□ -1.72
VPS53-212ENST00000572259 BORCS7-ASMTA0A0B4J1R7 106 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 OR2T8A6NH00 312 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 CEBPZOSA8MTT3 80 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 INMT-MINDY4F8WBC2 141 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 INS-IGF2F8WCM5 200 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 K7EIL1 84 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 GNG7O60262 68 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 ZNF253O75346 499 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 IGKV1-5P01602 117 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 IGLV1-51P01701 117 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 CFC1BP0CG36 223 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 CFC1P0CG37 223 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 IL15RAQ13261 267 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 GFI1BQ5VTD9 330 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 GPR146Q96CH1 333 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 YPEL4Q96NS1 127 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 VPS25Q9BRG1 176 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 CACNG5Q9UF02 275 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 U3KQ87 197 aa4.33□□□□□ -1.72
VPS53-212ENST00000572259 TRAV30A0A087WSZ9 112 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 C2orf70A6NJV1 201 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 KNCNA6PVL3 124 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 ZNF705GA8MUZ8 300 aaPredicted RBP4.32□□□□□ -1.72
VPS53-212ENST00000572259 KRTAP4-16G5E9R7 235 aaPredicted RBP4.32□□□□□ -1.72
VPS53-212ENST00000572259 NDUFA4O00483 81 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 ISLRO14498 428 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 SFT2D2O95562 160 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 P0C879 139 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 SLC25A6P12236 298 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 CBLN1P23435 193 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 OPRK1P41145 380 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 CXCL6P80162 114 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 ATP5L2Q7Z4Y8 100 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 PRNTQ86SH4 94 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 ORAOV1Q8WV07 137 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 RPUSD4Q96CM3 377 aaKnown RBP4.32□□□□□ -1.72
VPS53-212ENST00000572259 NARS2Q96I59 477 aaKnown RBP4.32□□□□□ -1.72
VPS53-212ENST00000572259 CIB3Q96Q77 187 aaPredicted RBP4.32□□□□□ -1.72
VPS53-212ENST00000572259 LITAFQ99732 161 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 B9D2Q9BPU9 175 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 TMEM126AQ9H061 195 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 TUBA4BQ9H853 241 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 PXMP4Q9Y6I8 212 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 S4R3C0 116 aa4.32□□□□□ -1.72
VPS53-212ENST00000572259 IGHV3-21A0A0B4J1V1 117 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 IGHV3-74A0A0B4J1X5 117 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 A8MWP6 167 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 I3L2K1 104 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 K7EIM0 57 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 DLEU1O43261 78 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 COX7A2P2O60397 106 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 NDUFB6O95139 128 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 IFNA10P01566 189 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 SCGB1C2P0DMR2 95 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 SLC25A4P12235 298 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 IL7P13232 177 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 GATA2P23769 480 aaPredicted RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 MT3P25713 68 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 S100A7P31151 101 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 CMC4P56277 68 aaPredicted RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 SUPT4H1P63272 117 aaKnown RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 DAZ2Q13117 558 aaKnown RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 DEFB114Q30KQ6 69 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 C2orf83Q53S99 150 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 SPINK9Q5DT21 86 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 IBA57Q5T440 356 aaKnown RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 IL34Q6ZMJ4 242 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 FA2HQ7L5A8 372 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 LYZL2Q7Z4W2 148 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 FAM19A3Q7Z5A8 133 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 DAZ4Q86SG3 579 aaKnown RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 ANKRD29Q8N6D5 301 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 SCGB1C1Q8TD33 95 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 FAM104AQ969W3 186 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 PLEKHB2Q96CS7 222 aa4.31□□□□□ -1.72
VPS53-212ENST00000572259 ZNF436Q9C0F3 470 aaPredicted RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 DAZ1Q9NQZ3 744 aaKnown RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 DAZ3Q9NR90 486 aaKnown RBP4.31□□□□□ -1.72
VPS53-212ENST00000572259 A0A087WX48 190 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 TRAV14DV4A0A0A6YYC5 116 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 C9orf170A2RU37 121 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 LYRM1O43325 122 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 IFNA4P05014 189 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 CTSGP08311 255 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 RNASE2P10153 161 aaKnown RBP4.3□□□□□ -1.72
VPS53-212ENST00000572259 NPY1RP25929 384 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 PSMB3P49720 205 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 ZNF846Q147U1 533 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 ZFP69Q49AA0 526 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 NMSQ5H8A3 153 aa4.3□□□□□ -1.72
VPS53-212ENST00000572259 C7orf33Q8WU49 177 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms