RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PLECQ15149 4684 aaKnown RBP1.91□□□□□ -2.1
VPS35-209ENST00000568642 IGHV3-21A0A0B4J1V1 117 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 TRBV27A0A0K0K1C4 114 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 MDFIC2A0A1B0GVS7 189 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 FAM168BA1KXE4 195 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 A8MWL6 223 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 DEFB108AA8MXU0 73 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 M0R129 80 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 LEPROTO15243 131 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 NAPSAO96009 420 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 LHBP01229 141 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 HLA-DQA1P01909 254 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 TCRAP04437 139 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 SLC25A5P05141 298 aaKnown RBP1.91□□□□□ -2.1
VPS35-209ENST00000568642 BRS3P32247 399 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 DYNLT3P51808 116 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 C10orf91Q5T1B1 145 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 FOXI2Q6ZQN5 318 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 Q6ZTC4 211 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 LINC00305Q7Z4B0 112 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 SLC35E3Q7Z769 313 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 AMN1Q8IY45 258 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 TMEM256Q8N2U0 113 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 LINC00471Q8N535 108 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 CD177Q8N6Q3 437 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 C14orf178Q8N769 122 aaPredicted RBP1.91□□□□□ -2.1
VPS35-209ENST00000568642 POM121L12Q8N7R1 296 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 SPANXA2-OT1Q8N9U9 137 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 FER1L6-AS1Q8NA97 138 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 MORN4Q8NDC4 146 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 OR8D4Q8NGM9 314 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 OR5H6Q8NGV6 325 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 CLDND2Q8NHS1 167 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 BRK1Q8WUW1 75 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 RBPMSQ93062 196 aaKnown RBP1.91□□□□□ -2.1
VPS35-209ENST00000568642 DIRC1Q969H9 104 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 OPRPNQ99935 248 aaPredicted RBP1.91□□□□□ -2.1
VPS35-209ENST00000568642 TBL1YQ9BQ87 522 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 MRPL57Q9BQC6 102 aaKnown RBP1.91□□□□□ -2.1
VPS35-209ENST00000568642 OR5V1Q9UGF6 321 aa1.91□□□□□ -2.1
VPS35-209ENST00000568642 TNCP24821 2201 aa1.9□□□□□ -2.1
VPS35-209ENST00000568642 TRAV27A0A087WT01 109 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 IRGMA1A4Y4 181 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 MEIS3P1A6NDR6 274 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 C1orf196B1AJZ1 125 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 B4DSR2 109 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 C11orf94C9JXX5 98 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 H7C423 109 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 SOD1P00441 154 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 KRASP01116 189 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 CD2P06729 351 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 CXCL8P10145 99 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 HLA-DMBP28068 263 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 SDC2P34741 201 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 GNG4P50150 75 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 RPL30P62888 115 aaKnown RBP1.9□□□□□ -2.11
VPS35-209ENST00000568642 HBBP68871 147 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 MRPS10P82664 201 aaKnown RBP1.9□□□□□ -2.11
VPS35-209ENST00000568642 HSD52Q0P140 79 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 EBI3Q14213 229 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 FAM229BQ4G0N7 80 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 ZC2HC1BQ5TFG8 222 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 LYRM7Q5U5X0 104 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 Q6P435 159 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 RPL22L1Q6P5R6 122 aaKnown RBP1.9□□□□□ -2.11
VPS35-209ENST00000568642 C22orf39Q6P5X5 142 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 LCN15Q6UWW0 184 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 TEN1Q86WV5 123 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 OR10G2Q8NGC3 310 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 OR5A2Q8NGI9 324 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 OR5D14Q8NGL3 314 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 OR10AC1Q8NH08 325 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 DEDD2Q8WXF8 326 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 SNRNP25Q9BV90 132 aaKnown RBP1.9□□□□□ -2.11
VPS35-209ENST00000568642 ZNF471Q9BX82 626 aaPredicted RBP1.9□□□□□ -2.11
VPS35-209ENST00000568642 BANF2Q9H503 90 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 C21orf62Q9NYP8 219 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 FAM215AQ9Y5M1 114 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 DNAJC15Q9Y5T4 150 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 MPC1Q9Y5U8 109 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 DYNC1H1Q14204 4646 aaKnown RBP1.9□□□□□ -2.11
VPS35-209ENST00000568642 DNAH11Q96DT5 4516 aa1.9□□□□□ -2.11
VPS35-209ENST00000568642 TRAV13-1A0A0B4J241 112 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 IGHV1-3A0A0C4DH29 117 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 TMEM223A0PJW6 202 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 TMEM218A2RU14 115 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 A6NN06 94 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 H3BMG7 143 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 H3BMM0 161 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 CDC42EP2O14613 210 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 UBE2L6O14933 153 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 HCRTO43612 131 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 NDUFB2O95178 105 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 IGHV1-46P01743 117 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 CLPSP04118 112 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 ATP6V0CP27449 155 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 ASIPP42127 132 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 CRIP2P52943 208 aaPredicted RBP1.89□□□□□ -2.11
VPS35-209ENST00000568642 TAS2R45P59539 299 aa1.89□□□□□ -2.11
VPS35-209ENST00000568642 UBE2BP63146 152 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms