RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 H3BVH4 76 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 LTAP01374 205 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 RNASE3P12724 160 aaKnown RBP9.64□□□□□ -0.87
CLN3-235ENST00000568497 RPL35P42766 123 aaKnown RBP9.64□□□□□ -0.87
CLN3-235ENST00000568497 SSTP61278 116 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 TDRG1Q3Y452 100 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 SAPCD1Q5SSQ6 148 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 FMC1Q96HJ9 113 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 NKX6-2Q9C056 277 aaPredicted RBP9.64□□□□□ -0.87
CLN3-235ENST00000568497 JPT2Q9H910 190 aa9.64□□□□□ -0.87
CLN3-235ENST00000568497 LOC100131303A0A0U1RQF7 123 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 B4DEV8 164 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 BCL2P10415 239 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 FHL2Q14192 279 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 CENPWQ5EE01 88 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 BAGE2Q86Y30 109 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 MANBALQ9NQG1 85 aa9.63□□□□□ -0.87
CLN3-235ENST00000568497 FABP5P3A8MUU1 101 aa9.62□□□□□ -0.87
CLN3-235ENST00000568497 KRBOX1C9JBD0 128 aa9.62□□□□□ -0.87
CLN3-235ENST00000568497 MED9Q9NWA0 146 aa9.62□□□□□ -0.87
CLN3-235ENST00000568497 M0R2P5 195 aa9.61□□□□□ -0.87
CLN3-235ENST00000568497 IGLV2-8P01709 118 aa9.61□□□□□ -0.87
CLN3-235ENST00000568497 GZMBP10144 247 aa9.61□□□□□ -0.87
CLN3-235ENST00000568497 MGST1P10620 155 aaKnown RBP9.61□□□□□ -0.87
CLN3-235ENST00000568497 CEBPGP53567 150 aa9.61□□□□□ -0.87
CLN3-235ENST00000568497 C9orf85Q96MD7 179 aa9.61□□□□□ -0.87
CLN3-235ENST00000568497 TRBV20OR9-2A0A075B6H5 130 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 TRBV6-1A0A0K0K1D8 114 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 MEF2BQ02080 365 aaPredicted RBP9.6□□□□□ -0.87
CLN3-235ENST00000568497 ZNF674Q2M3X9 581 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 ZNF876PQ49A33 203 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 TOR2AQ5JU69 321 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 ZNF506Q5JVG8 444 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 FAM162BQ5T6X4 162 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 Q6ZSN1 163 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 C11orf52Q96A22 123 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 KCNS1Q96KK3 526 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 SAMD10Q9BYL1 202 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 ZFP30Q9Y2G7 519 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 LINC00588Q9Y4M8 146 aa9.6□□□□□ -0.87
CLN3-235ENST00000568497 TRGV4A0A0C4DH28 118 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 FBLL1A6NHQ2 334 aaKnown RBP9.59□□□□□ -0.87
CLN3-235ENST00000568497 ARMS2P0C7Q2 107 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 S100A4P26447 101 aaKnown RBP9.59□□□□□ -0.87
CLN3-235ENST00000568497 DMRTA1Q5VZB9 504 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 SPATA12Q7Z6I5 190 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 OR4C5Q8NGB2 326 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 RASL10AQ92737 203 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 C18orf15Q96N68 181 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 SPXQ9BT56 116 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 MLST8Q9BVC4 326 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 Q9UF83 564 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 VAX2Q9UIW0 290 aa9.59□□□□□ -0.87
CLN3-235ENST00000568497 PAX4O43316 350 aa9.58□□□□□ -0.88
CLN3-235ENST00000568497 IFNA1P01562 189 aa9.58□□□□□ -0.88
CLN3-235ENST00000568497 ASIPP42127 132 aa9.58□□□□□ -0.88
CLN3-235ENST00000568497 CRYBA4P53673 196 aa9.58□□□□□ -0.88
CLN3-235ENST00000568497 ESRGQ1W209 222 aa9.58□□□□□ -0.88
CLN3-235ENST00000568497 RBFOX3A6NFN3 312 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 M0R381 172 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 BLOC1S1P78537 153 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 SRSF3P84103 164 aaKnown RBP9.57□□□□□ -0.88
CLN3-235ENST00000568497 RNF212Q495C1 297 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 CFAP126Q5VTH2 177 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 COX8CQ7Z4L0 72 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 FAM210BQ96KR6 192 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 TCEAL7Q9BRU2 100 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 HHLA3Q9XRX5 114 aa9.57□□□□□ -0.88
CLN3-235ENST00000568497 A0A087WWL8 130 aa9.56□□□□□ -0.88
CLN3-235ENST00000568497 TRAV4A0A0B4J268 109 aa9.56□□□□□ -0.88
CLN3-235ENST00000568497 C9JQL5 133 aa9.56□□□□□ -0.88
CLN3-235ENST00000568497 RS1O15537 224 aa9.56□□□□□ -0.88
CLN3-235ENST00000568497 LINC01559Q495D7 138 aa9.56□□□□□ -0.88
CLN3-235ENST00000568497 C15orf53Q8NAA6 179 aa9.56□□□□□ -0.88
CLN3-235ENST00000568497 K7EN84 100 aa9.55□□□□□ -0.88
CLN3-235ENST00000568497 GYPEP15421 78 aa9.55□□□□□ -0.88
CLN3-235ENST00000568497 GNG4P50150 75 aa9.55□□□□□ -0.88
CLN3-235ENST00000568497 OR10AG1Q8NH19 301 aa9.55□□□□□ -0.88
CLN3-235ENST00000568497 LYPD6BQ8NI32 183 aa9.55□□□□□ -0.88
CLN3-235ENST00000568497 TPPP3Q9BW30 176 aa9.55□□□□□ -0.88
CLN3-235ENST00000568497 S100A9P06702 114 aaKnown RBP9.54□□□□□ -0.88
CLN3-235ENST00000568497 TEX261Q6UWH6 196 aa9.54□□□□□ -0.88
CLN3-235ENST00000568497 C6orf223Q8N319 242 aa9.54□□□□□ -0.88
CLN3-235ENST00000568497 C14orf178Q8N769 122 aaPredicted RBP9.54□□□□□ -0.88
CLN3-235ENST00000568497 OCC1Q8TAD7 63 aa9.54□□□□□ -0.88
CLN3-235ENST00000568497 EIF5A2Q9GZV4 153 aaKnown RBP9.54□□□□□ -0.88
CLN3-235ENST00000568497 RNASE7Q9H1E1 156 aaKnown RBP9.54□□□□□ -0.88
CLN3-235ENST00000568497 PARLQ9H300 379 aa9.54□□□□□ -0.88
CLN3-235ENST00000568497 PRO0255Q9UI72 69 aa9.54□□□□□ -0.88
CLN3-235ENST00000568497 FLG2Q5D862 2391 aaPredicted RBP9.53□□□□□ -0.88
CLN3-235ENST00000568497 K7EQD1 137 aa9.53□□□□□ -0.88
CLN3-235ENST00000568497 PDE6DO43924 150 aa9.53□□□□□ -0.88
CLN3-235ENST00000568497 GATA1P15976 413 aaPredicted RBP9.53□□□□□ -0.88
CLN3-235ENST00000568497 FAM74A4Q5TZK3 123 aa9.53□□□□□ -0.88
CLN3-235ENST00000568497 OR2D3Q8NGH3 330 aa9.53□□□□□ -0.88
CLN3-235ENST00000568497 ZNRF2Q8NHG8 242 aa9.53□□□□□ -0.88
CLN3-235ENST00000568497 MYCBP2O75592 4640 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 J3QL48 77 aa9.52□□□□□ -0.89
CLN3-235ENST00000568497 SRP19P09132 144 aaKnown RBP9.52□□□□□ -0.89
CLN3-235ENST00000568497 Q5VSD8 79 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms