RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 KRTAP1-5Q9BYS1 174 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 JPT2Q9H910 190 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 Q9UF83 564 aa6.8□□□□□ -1.32
CLN3-220ENST00000566040 DYNC1H1Q14204 4646 aaKnown RBP6.79□□□□□ -1.32
CLN3-220ENST00000566040 TRGV2A0A075B6R0 118 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 TRAV4A0A0B4J268 109 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 GRIFINA4D1Z8 144 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 B4DEV8 164 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 H3BVH4 76 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 K7EN84 100 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 NXPH4O95158 308 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 LINC00694P0DN24 101 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 OR5I1Q13606 314 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 ESRGQ1W209 222 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 FAM162BQ5T6X4 162 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 SAMD10Q9BYL1 202 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 IL36BQ9NZH7 164 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 VAX2Q9UIW0 290 aa6.79□□□□□ -1.32
CLN3-220ENST00000566040 TMSB15BA0A087X1C1 80 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 C9JQL5 133 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 NUDT3O95989 172 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 S100A9P06702 114 aaKnown RBP6.78□□□□□ -1.32
CLN3-220ENST00000566040 P0DMU3 169 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 FAM231AP0DMU4 169 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 FAM231CP0DMU5 169 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 GATA1P15976 413 aaPredicted RBP6.78□□□□□ -1.32
CLN3-220ENST00000566040 RNF212Q495C1 297 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 TEX261Q6UWH6 196 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 BAGE2Q86Y30 109 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 TXNDC17Q9BRA2 123 aa6.78□□□□□ -1.32
CLN3-220ENST00000566040 TEX46H3BTG2 121 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 RTL8CO15255 209 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 SNAI2O43623 268 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 ORM1P02763 201 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 CXCL1P09341 107 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 ARMS2P0C7Q2 107 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 SRSF3P84103 164 aaKnown RBP6.77□□□□□ -1.33
CLN3-220ENST00000566040 ZNF876PQ49A33 203 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 DMRTA1Q5VZB9 504 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 SSBP4Q9BWG4 385 aaPredicted RBP6.77□□□□□ -1.33
CLN3-220ENST00000566040 PARLQ9H300 379 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 DNAH5Q8TE73 4624 aa6.77□□□□□ -1.33
CLN3-220ENST00000566040 RBFOX3A6NFN3 312 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 C9JCJ5 164 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 K7EQD1 137 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 PDE6DO43924 150 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 IGLC6P0CF74 106 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 ASIPP42127 132 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 BLOC1S1P78537 153 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 TOR2AQ5JU69 321 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 OR10AG1Q8NH19 301 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 FAM210AQ96ND0 272 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 PRO0255Q9UI72 69 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 HHLA3Q9XRX5 114 aa6.76□□□□□ -1.33
CLN3-220ENST00000566040 IGLV2-18A0A075B6J9 118 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 CRYGDP07320 174 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 SRP19P09132 144 aaKnown RBP6.75□□□□□ -1.33
CLN3-220ENST00000566040 GZMBP10144 247 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 IFITM2Q01629 132 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 PIK3CD-AS1Q5SR53 167 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 PRR27Q6MZM9 219 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 SLC25A29Q8N8R3 303 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 OR4C5Q8NGB2 326 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 UPK3BQ9BT76 320 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 MED9Q9NWA0 146 aa6.75□□□□□ -1.33
CLN3-220ENST00000566040 MRPS16Q9Y3D3 137 aaKnown RBP6.75□□□□□ -1.33
CLN3-220ENST00000566040 IGHV3-73A0A0B4J1V6 119 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 A0A1B0GVY2 172 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 TMEM250H0YL14 139 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 PAX4O43316 350 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 NDUFS6O75380 124 aaKnown RBP6.74□□□□□ -1.33
CLN3-220ENST00000566040 IFNA1P01562 189 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 MED14OSP0DP75 135 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 LINC00315P59091 139 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 C14orf178Q8N769 122 aaPredicted RBP6.74□□□□□ -1.33
CLN3-220ENST00000566040 OCC1Q8TAD7 63 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 SMIM12Q96EX1 92 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 SFRP2Q96HF1 295 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 KIF25-AS1Q9Y6Z4 181 aa6.74□□□□□ -1.33
CLN3-220ENST00000566040 TRGV4A0A0C4DH28 118 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 MUC21A0A0G2JKD1 596 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 MUC21A0A140T8X8 626 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 M0R2N4 97 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 OR5AL1P0C617 328 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 GYPEP15421 78 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 TAGLN2P37802 199 aaKnown RBP6.73□□□□□ -1.33
CLN3-220ENST00000566040 GNG4P50150 75 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 ICOSQ9Y6W8 199 aa6.73□□□□□ -1.33
CLN3-220ENST00000566040 TRBV6-4A0A1B0GX49 114 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 FAM3BP58499 235 aaPredicted RBP6.72□□□□□ -1.33
CLN3-220ENST00000566040 LYPD5Q6UWN5 251 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 ZFP2Q6ZN57 461 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 UBE2DNLQ8IWF7 75 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 NUDT10Q8NFP7 164 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 NUDT11Q96G61 164 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 RNASE7Q9H1E1 156 aaKnown RBP6.72□□□□□ -1.33
CLN3-220ENST00000566040 MSRB1Q9NZV6 116 aa6.72□□□□□ -1.33
CLN3-220ENST00000566040 A0A087WWL8 130 aa6.71□□□□□ -1.34
CLN3-220ENST00000566040 NBDYA0A0U1RRE5 68 aa6.71□□□□□ -1.34
CLN3-220ENST00000566040 A8MWV9 139 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms