RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 EDA2RQ9HAV5 297 aa8.7□□□□□ -1.02
CUX1-218ENST00000560541 KLK5Q9Y337 293 aaPredicted RBP8.7□□□□□ -1.02
CUX1-218ENST00000560541 HIVEP3Q5T1R4 2406 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 IGKV3D-20A0A0C4DH25 116 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 K7ENP7 123 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 SRD5A1P18405 259 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 COX8CQ7Z4L0 72 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 DTX2Q86UW9 622 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 TMEM158Q8WZ71 300 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 FOXC2Q99958 501 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 CHCHD5Q9BSY4 110 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 SPRY2O43597 315 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 BUB3O43684 328 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 TMEM8BA6NDV4 472 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 AGPAT4-IT1Q9H0P7 198 aa8.69□□□□□ -1.02
CUX1-218ENST00000560541 PIMREGQ9BSJ6 248 aa8.68□□□□□ -1.02
CUX1-218ENST00000560541 ZFAND3Q9H8U3 227 aa8.68□□□□□ -1.02
CUX1-218ENST00000560541 LINC00527Q9UJ94 153 aa8.68□□□□□ -1.02
CUX1-218ENST00000560541 SPTBN4Q9H254 2564 aa8.68□□□□□ -1.02
CUX1-218ENST00000560541 ADORA2A-AS1P86434 159 aa8.68□□□□□ -1.02
CUX1-218ENST00000560541 DLX4Q92988 240 aaPredicted RBP8.67□□□□□ -1.02
CUX1-218ENST00000560541 CCDC140Q96MF4 163 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 PSMG3-AS1Q96PY0 264 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 TMEM160Q9NX00 188 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 CLPSL1A2RUU4 121 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 TEN1Q86WV5 123 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 ATP6V0E2Q8NHE4 81 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 HHLA3Q9XRX5 114 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 A0A1W2PPR1 153 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 F5H768 121 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 LINC01559Q495D7 138 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 ZC2HC1BQ5TFG8 222 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 C11orf71Q6IPW1 123 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 ANKRD29Q8N6D5 301 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 MAPKAPK5-AS1Q8N8E1 139 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 RASL10AQ92737 203 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 RAXQ9Y2V3 346 aa8.67□□□□□ -1.02
CUX1-218ENST00000560541 EMP1P54849 157 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 DNAJC30Q96LL9 226 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 CNFNQ9BYD5 112 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 IGHV3OR16-10A0A075B7F0 116 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 OOSP1A8MZH6 123 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 IGKCP01834 107 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 SAA4P35542 130 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 FBXL19-AS1Q494R0 122 aa8.66□□□□□ -1.02
CUX1-218ENST00000560541 NXT2Q9NPJ8 142 aaKnown RBP8.66□□□□□ -1.02
CUX1-218ENST00000560541 SPG11Q96JI7 2443 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 TRAV40A0A0B4J280 105 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 EFNA4P52798 201 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 DEFB1P60022 68 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 EBI3Q14213 229 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 TMEM78Q5T7P6 136 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 TMEM219Q86XT9 240 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 FAM110DQ8TAY7 271 aaPredicted RBP8.65□□□□□ -1.02
CUX1-218ENST00000560541 IGF1P05019 195 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 MINOS1Q5TGZ0 78 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 LINC01587Q99440 93 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 MRPL35Q9NZE8 188 aaKnown RBP8.65□□□□□ -1.02
CUX1-218ENST00000560541 MINOS1-NBL1R4GNA1 71 aa8.65□□□□□ -1.02
CUX1-218ENST00000560541 LINC01549A6NIU2 74 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 C9JAW5 83 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 TMEM262E9PQX1 116 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 SPANXN1Q5VSR9 72 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 C15orf53Q8NAA6 179 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 CITED2Q99967 270 aaPredicted RBP8.65□□□□□ -1.03
CUX1-218ENST00000560541 SIRPDQ9H106 197 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 KLK15Q9H2R5 256 aa8.65□□□□□ -1.03
CUX1-218ENST00000560541 A8MWV9 139 aa8.64□□□□□ -1.03
CUX1-218ENST00000560541 SRSF2Q01130 221 aaKnown RBP8.64□□□□□ -1.03
CUX1-218ENST00000560541 MORN3Q6PF18 240 aaPredicted RBP8.64□□□□□ -1.03
CUX1-218ENST00000560541 IGHV7-4-1A0A0J9YVY3 117 aa8.64□□□□□ -1.03
CUX1-218ENST00000560541 TMEM126AQ9H061 195 aa8.64□□□□□ -1.03
CUX1-218ENST00000560541 HOXA3O43365 443 aaPredicted RBP8.63□□□□□ -1.03
CUX1-218ENST00000560541 PRR9Q5T870 116 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 Q8N8P6 123 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 METTL26Q96S19 204 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 SLC50A1Q9BRV3 221 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 HIGD1BQ9P298 99 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 IGLV2-18A0A075B6J9 118 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 DPM2O94777 84 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 NRACQ8N912 160 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 C16orf92Q96LL3 132 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 ZMAT4Q9H898 229 aa8.63□□□□□ -1.03
CUX1-218ENST00000560541 IGKV3-7A0A075B6H7 116 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 M0R381 172 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 NPFFO15130 113 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 NBL1P41271 181 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 LAGE3Q14657 143 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 C10orf126Q8N4M7 172 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 MYOZ3Q8TDC0 251 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 EEF1AKMT3Q96AZ1 226 aa8.62□□□□□ -1.03
CUX1-218ENST00000560541 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.61□□□□□ -1.033e-7■■■■■ 26.8
CUX1-218ENST00000560541 RBAKDNA6NC62 111 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 DEFB104AQ8WTQ1 72 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 LINC01546A6NGU7 62 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 SCGB1C2P0DMR2 95 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 UBE2E1P51965 193 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 C9orf153Q5TBE3 101 aa8.61□□□□□ -1.03
CUX1-218ENST00000560541 C20orf173Q96LM9 149 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms