RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 AGRNO00468 2067 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 A0A1B0GUT8 65 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 C7orf71A4D174 169 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 H3BMM0 161 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 TRGC2P03986 189 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 IGLC6P0CF74 106 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 MED14OSP0DP75 135 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 PRB4P10163 310 aaPredicted RBP10.11□□□□□ -0.79
LDLR-213ENST00000560502 FER1L6-AS1Q8NA97 138 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 CNFNQ9BYD5 112 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 TRAPPC1Q9Y5R8 145 aa10.11□□□□□ -0.79
LDLR-213ENST00000560502 PHOX2AO14813 284 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 DNLZQ5SXM8 178 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 PRR9Q5T870 116 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 GDF5OSQ5U4N7 250 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 AMTNQ6UX39 209 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 GATD1Q8NB37 220 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 KCNS1Q96KK3 526 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 C20orf144Q9BQM9 153 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 APLNQ9ULZ1 77 aa10.1□□□□□ -0.79
LDLR-213ENST00000560502 SNURFLB1AK76 121 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 DEFB4AO15263 64 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 DEFB1P60022 68 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 MRPL54Q6P161 138 aaKnown RBP10.09□□□□□ -0.79
LDLR-213ENST00000560502 TMEM136Q6ZRR5 245 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 Q8NAQ8 132 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 PGLYRP4Q96LB8 373 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 FAT2Q9NYQ8 4349 aa10.09□□□□□ -0.79
LDLR-213ENST00000560502 IGKV3D-20A0A0C4DH25 116 aa10.08□□□□□ -0.8
LDLR-213ENST00000560502 GIG44P09565 113 aaPredicted RBP10.08□□□□□ -0.8
LDLR-213ENST00000560502 OR5AL1P0C617 328 aa10.08□□□□□ -0.8
LDLR-213ENST00000560502 RNASE4P34096 147 aaKnown RBP10.08□□□□□ -0.8
LDLR-213ENST00000560502 TDRG1Q3Y452 100 aa10.08□□□□□ -0.8
LDLR-213ENST00000560502 MRPL18Q9H0U6 180 aaKnown RBP10.08□□□□□ -0.8
LDLR-213ENST00000560502 DNAH17Q9UFH2 4485 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 KNCNA6PVL3 124 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 SNAI2O43623 268 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 S100A6P06703 90 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 GZMBP10144 247 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 ASIPP42127 132 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 CACNG7P62955 275 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 FABP9Q0Z7S8 132 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 FAM159AQ6UWV7 190 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 STHQ8IWL8 128 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 FRZBQ92765 325 aa10.07□□□□□ -0.8
LDLR-213ENST00000560502 SSBP4Q9BWG4 385 aaPredicted RBP10.07□□□□□ -0.8
LDLR-213ENST00000560502 TMSB15BA0A087X1C1 80 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 SPINK4O60575 86 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BKO60814 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BJP06899 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 RBMY1A1P0DJD3 496 aaKnown RBP10.06□□□□□ -0.8
LDLR-213ENST00000560502 RBMY1CP0DJD4 496 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BOP23527 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BBP33778 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BDP58876 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 RAB4BP61018 213 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 NUTF2P61970 127 aaKnown RBP10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BCP62807 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 RBMY1FQ15415 496 aaKnown RBP10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST2H2BEQ16778 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.06□□□□□ -0.8
LDLR-213ENST00000560502 GFI1BQ5VTD9 330 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 LYZL1Q6UWQ5 148 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BHQ93079 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BNQ99877 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 HIST1H2BMQ99879 126 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 C11orf21Q9P2W6 132 aa10.06□□□□□ -0.8
LDLR-213ENST00000560502 DNAH2Q9P225 4427 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 IGHV4-4A0A075B6R2 117 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 IGHV4-28A0A0C4DH34 117 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 IGLL5B9A064 214 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 ZNF324O75467 553 aaPredicted RBP10.05□□□□□ -0.8
LDLR-213ENST00000560502 APCSP02743 223 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 ARMS2P0C7Q2 107 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 TRGC1P0CF51 173 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 SPINK13Q1W4C9 94 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 ZNF493Q6ZR52 646 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 TRPT1Q86TN4 253 aaKnown RBP10.05□□□□□ -0.8
LDLR-213ENST00000560502 ZFP82Q8N141 532 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 LINC00467Q9BRT7 94 aa10.05□□□□□ -0.8
LDLR-213ENST00000560502 J3KRW8 73 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 M0R2Z0 102 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 INSP01308 110 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 ANXA2RQ3ZCQ2 193 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 ZNF575Q86XF7 245 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 TPPP3Q9BW30 176 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 NAGKQ9UJ70 344 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 X6R8D5 127 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 DNAH11Q96DT5 4516 aa10.04□□□□□ -0.8
LDLR-213ENST00000560502 PKHD1P08F94 4074 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 TRGV11A0A075B6L2 103 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 TRAV12-3A0A0B4J271 114 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 IGKV3-20P01619 116 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 MIFP14174 115 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 S100A4P26447 101 aaKnown RBP10.03□□□□□ -0.8
LDLR-213ENST00000560502 CAMPP49913 170 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 COA6Q5JTJ3 125 aaKnown RBP10.03□□□□□ -0.8
LDLR-213ENST00000560502 MORN3Q6PF18 240 aaPredicted RBP10.03□□□□□ -0.8
LDLR-213ENST00000560502 Q6ZTC4 211 aa10.03□□□□□ -0.8
LDLR-213ENST00000560502 TMEM256Q8N2U0 113 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms