RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 HIVEP3Q5T1R4 2406 aa12.36□□□□□ -0.43
SHMT2-232ENST00000557487 TRAV41A0A0B4J266 112 aa12.36□□□□□ -0.43
SHMT2-232ENST00000557487 NDUFA4O00483 81 aa12.36□□□□□ -0.43
SHMT2-232ENST00000557487 FAM19A4Q96LR4 140 aa12.36□□□□□ -0.43
SHMT2-232ENST00000557487 TSSC4Q9Y5U2 329 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-232ENST00000557487 RELNP78509 3460 aa12.36□□□□□ -0.43
SHMT2-232ENST00000557487 MYO18BQ8IUG5 2567 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 NPFFO15130 113 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 NXPH4O95158 308 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 PRADC1Q9BSG0 188 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 MOB4Q9Y3A3 225 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 ARHGAP32A7KAX9 2087 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 TENM4Q6N022 2769 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 IGHV3-49A0A0A0MS15 119 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 PRSS29PA6NIE9 313 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 SOCS3O14543 225 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 ARL3P36405 182 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 HERVK_113P61574 105 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 C20orf173Q96LM9 149 aa12.35□□□□□ -0.43
SHMT2-232ENST00000557487 H3BUA1 57 aa12.34□□□□□ -0.43
SHMT2-232ENST00000557487 ETDBQ3ZM63 59 aa12.34□□□□□ -0.43
SHMT2-232ENST00000557487 MORN3Q6PF18 240 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-232ENST00000557487 DLX4Q92988 240 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-232ENST00000557487 SPAG8Q99932 426 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-232ENST00000557487 CYSLTR1Q9Y271 337 aa12.34□□□□□ -0.43
SHMT2-232ENST00000557487 ANKHD1Q8IWZ3 2542 aaKnown RBP12.33□□□□□ -0.43
SHMT2-232ENST00000557487 IGHV4OR15-8A0A075B7B6 117 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 A0A087WW49 117 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 ZNF815PA8K554 130 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 UBE2D1P51668 147 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 RNF223E7ERA6 249 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 COX6B1P14854 86 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 ANXA2RQ3ZCQ2 193 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 C14orf178Q8N769 122 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-232ENST00000557487 TMEM141Q96I45 108 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 GTSF1LQ9H1H1 148 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 KLK15Q9H2R5 256 aa12.33□□□□□ -0.44
SHMT2-232ENST00000557487 LINC01548A6NM66 108 aa12.32□□□□□ -0.44
SHMT2-232ENST00000557487 NDUFS8O00217 210 aa12.32□□□□□ -0.44
SHMT2-232ENST00000557487 Q6ZQT7 251 aa12.32□□□□□ -0.44
SHMT2-232ENST00000557487 RPL39LQ96EH5 51 aaKnown RBP12.32□□□□□ -0.44
SHMT2-232ENST00000557487 USMG5Q96IX5 58 aa12.32□□□□□ -0.44
SHMT2-232ENST00000557487 MRPL16Q9NX20 251 aaKnown RBP12.32□□□□□ -0.44
SHMT2-232ENST00000557487 PGPEP1Q9NXJ5 209 aa12.32□□□□□ -0.44
SHMT2-232ENST00000557487 MGPP08493 103 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 SCGB1D4Q6XE38 83 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 GPHB5Q86YW7 130 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 BAHCC1Q9P281 2608 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 A0A1B0GV72 72 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 AMTNQ6UX39 209 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 LCNL1Q6ZST4 164 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 SH2D6Q7Z4S9 175 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 VCX2Q9H322 139 aa12.31□□□□□ -0.44
SHMT2-232ENST00000557487 SRSF9Q13242 221 aaKnown RBP eCLIP12.3□□□□□ -0.44
SHMT2-232ENST00000557487 CDSNQ15517 529 aa12.3□□□□□ -0.44
SHMT2-232ENST00000557487 C1QTNF4Q9BXJ3 329 aa12.3□□□□□ -0.44
SHMT2-232ENST00000557487 USP9XQ93008 2570 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-232ENST00000557487 FLNCQ14315 2725 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 APOMO95445 188 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 IGF1P05019 195 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 LMO4P61968 165 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 SMAGPQ0VAQ4 97 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 CFAP126Q5VTH2 177 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 TIMM17AQ99595 171 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 RNASE3P12724 160 aaKnown RBP12.29□□□□□ -0.44
SHMT2-232ENST00000557487 PMVKQ15126 192 aa12.29□□□□□ -0.44
SHMT2-232ENST00000557487 DOPEY1Q5JWR5 2465 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 TRBV20-1A0A075B6N2 111 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 VCYO14598 125 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 RNASE4P34096 147 aaKnown RBP12.28□□□□□ -0.44
SHMT2-232ENST00000557487 UBE2D3P61077 147 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 UBE2D2P62837 147 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 KIF25-AS1Q9Y6Z4 181 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 AGRNO00468 2067 aa12.28□□□□□ -0.44
SHMT2-232ENST00000557487 IGIPA6NJ69 53 aa12.27□□□□□ -0.44
SHMT2-232ENST00000557487 TCTEX1D4Q5JR98 221 aa12.27□□□□□ -0.44
SHMT2-232ENST00000557487 KIR2DL4Q99706 377 aa12.27□□□□□ -0.44
SHMT2-232ENST00000557487 C11orf86A6NJI1 115 aa12.27□□□□□ -0.45
SHMT2-232ENST00000557487 CRYGDP07320 174 aa12.27□□□□□ -0.45
SHMT2-232ENST00000557487 CD7P09564 240 aa12.27□□□□□ -0.45
SHMT2-232ENST00000557487 POLR2KP53803 58 aaKnown RBP12.27□□□□□ -0.45
SHMT2-232ENST00000557487 FOXI1Q12951 378 aa12.27□□□□□ -0.45
SHMT2-232ENST00000557487 WNK2Q9Y3S1 2297 aa12.26□□□□□ -0.45
SHMT2-232ENST00000557487 IGLV4-69A0A075B6H9 119 aa12.26□□□□□ -0.45
SHMT2-232ENST00000557487 TSPAN13O95857 204 aa12.26□□□□□ -0.45
SHMT2-232ENST00000557487 LINC00315P59091 139 aa12.26□□□□□ -0.45
SHMT2-232ENST00000557487 UNQ9165/PRO28630Q6UXU0 137 aa12.26□□□□□ -0.45
SHMT2-232ENST00000557487 A0A0J9YY99 117 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 TRBV6-5A0A0K0K1A5 114 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 KLLNB2CW77 178 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 J3KRW8 73 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 DUSP14O95147 198 aaKnown RBP12.25□□□□□ -0.45
SHMT2-232ENST00000557487 ZFP2Q6ZN57 461 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 TP53TG1Q9Y2A0 90 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 PLEKHB2Q96CS7 222 aa12.25□□□□□ -0.45
SHMT2-232ENST00000557487 LRRK2Q5S007 2527 aa12.24□□□□□ -0.45
SHMT2-232ENST00000557487 DOPEY2Q9Y3R5 2298 aa12.24□□□□□ -0.45
SHMT2-232ENST00000557487 GNRH2O43555 120 aa12.24□□□□□ -0.45
SHMT2-232ENST00000557487 ID1P41134 155 aa12.24□□□□□ -0.45
SHMT2-232ENST00000557487 FAM159AQ6UWV7 190 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms