RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ZNF418Q8TF45 676 aaPredicted RBP11.47□□□□□ -0.57
CUX1-215ENST00000556210 TMEM8BA6NDV4 472 aa11.46□□□□□ -0.57
CUX1-215ENST00000556210 LMO4P61968 165 aa11.46□□□□□ -0.57
CUX1-215ENST00000556210 ETDBQ3ZM63 59 aa11.46□□□□□ -0.57
CUX1-215ENST00000556210 DGAT2L7PQ6IED9 249 aa11.46□□□□□ -0.57
CUX1-215ENST00000556210 SPINK13Q1W4C9 94 aa11.46□□□□□ -0.57
CUX1-215ENST00000556210 IGKV3D-20A0A0C4DH25 116 aa11.46□□□□□ -0.58
CUX1-215ENST00000556210 DEFB136Q30KP8 78 aa11.46□□□□□ -0.58
CUX1-215ENST00000556210 SIRPDQ9H106 197 aa11.46□□□□□ -0.58
CUX1-215ENST00000556210 KIR2DL4Q99706 377 aa11.45□□□□□ -0.58
CUX1-215ENST00000556210 B4DSR2 109 aa11.45□□□□□ -0.58
CUX1-215ENST00000556210 AMTNQ6UX39 209 aa11.45□□□□□ -0.58
CUX1-215ENST00000556210 CYSLTR1Q9Y271 337 aa11.45□□□□□ -0.58
CUX1-215ENST00000556210 TEX48A0A1B0GUV7 120 aa11.45□□□□□ -0.58
CUX1-215ENST00000556210 SRSF1Q07955 248 aaKnown RBP eCLIP11.45□□□□□ -0.58
CUX1-215ENST00000556210 CCDC140Q96MF4 163 aa11.45□□□□□ -0.58
CUX1-215ENST00000556210 NPIPB6E9PJ23 425 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 LAGE3Q14657 143 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 BOD1L2Q8IYS8 172 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 FBXL19-AS1Q494R0 122 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 GAGE13Q4V321 117 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 PSMB2P49721 201 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 FXYD2P54710 66 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 C2orf91Q6ZV80 131 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 MRPL35Q9NZE8 188 aaKnown RBP11.44□□□□□ -0.58
CUX1-215ENST00000556210 TSSC4Q9Y5U2 329 aaPredicted RBP11.44□□□□□ -0.58
CUX1-215ENST00000556210 Q6ZS46 218 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 C9orf139Q6ZV77 190 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 SMAD5-AS1Q9Y6J3 95 aa11.44□□□□□ -0.58
CUX1-215ENST00000556210 FLNCQ14315 2725 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 IGKV3OR2-268A0A0C4DH90 116 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 TMEM238LA0A1B0GVL6 79 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 A6NJY4 79 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 ODF3BA8MYP8 253 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 C10orf99Q6UWK7 81 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 H3BMG7 143 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 C5orf56Q8N8D9 126 aa11.43□□□□□ -0.58
CUX1-215ENST00000556210 RPL39LQ96EH5 51 aaKnown RBP11.43□□□□□ -0.58
CUX1-215ENST00000556210 DAZ1Q9NQZ3 744 aaKnown RBP11.43□□□□□ -0.58
CUX1-215ENST00000556210 FSTL3O95633 263 aa11.42□□□□□ -0.58
CUX1-215ENST00000556210 HERVK_113P61574 105 aa11.42□□□□□ -0.58
CUX1-215ENST00000556210 DEFB112Q30KQ8 113 aa11.42□□□□□ -0.58
CUX1-215ENST00000556210 C1orf122Q6ZSJ8 110 aa11.42□□□□□ -0.58
CUX1-215ENST00000556210 LYRM7Q5U5X0 104 aa11.41□□□□□ -0.58
CUX1-215ENST00000556210 SMPXQ9UHP9 88 aa11.41□□□□□ -0.58
CUX1-215ENST00000556210 SIVA1O15304 175 aa11.41□□□□□ -0.58
CUX1-215ENST00000556210 AJUBAQ96IF1 538 aa11.41□□□□□ -0.58
CUX1-215ENST00000556210 AZU1P20160 251 aa11.41□□□□□ -0.58
CUX1-215ENST00000556210 JPT2Q9H910 190 aa11.41□□□□□ -0.58
CUX1-215ENST00000556210 A0A0U1RRA0 63 aa11.4□□□□□ -0.58
CUX1-215ENST00000556210 TRBV25-1A0A075B6N4 114 aa11.4□□□□□ -0.58
CUX1-215ENST00000556210 CHTOPQ9Y3Y2 248 aaKnown RBP11.4□□□□□ -0.58
CUX1-215ENST00000556210 OVOL1O14753 267 aa11.4□□□□□ -0.58
CUX1-215ENST00000556210 C11orf71Q6IPW1 123 aa11.4□□□□□ -0.58
CUX1-215ENST00000556210 G3V4G9 280 aa11.39□□□□□ -0.59
CUX1-215ENST00000556210 HOXA3O43365 443 aaPredicted RBP11.39□□□□□ -0.59
CUX1-215ENST00000556210 SH2D6Q7Z4S9 175 aa11.39□□□□□ -0.59
CUX1-215ENST00000556210 ZNF815PA8K554 130 aa11.39□□□□□ -0.59
CUX1-215ENST00000556210 FAM223BA6NKX1 122 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 FAM223AQ8IWN6 122 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 UBE2E2Q96LR5 201 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 LINC01587Q99440 93 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 WFDC2Q14508 124 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 DPH3P1Q9H4G8 78 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 AGRNO00468 2067 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 PRSS47A8MTI9 375 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 DEFB131AP59861 70 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 SYT8Q8NBV8 401 aa11.38□□□□□ -0.59
CUX1-215ENST00000556210 SUMO2P61956 95 aaKnown RBP11.37□□□□□ -0.59
CUX1-215ENST00000556210 CEND1Q8N111 149 aa11.37□□□□□ -0.59
CUX1-215ENST00000556210 PGPEP1Q9NXJ5 209 aa11.37□□□□□ -0.59
CUX1-215ENST00000556210 GAGE12HA6NDE8 117 aa11.37□□□□□ -0.59
CUX1-215ENST00000556210 ZNF876PQ49A33 203 aa11.37□□□□□ -0.59
CUX1-215ENST00000556210 C2orf66Q6UXQ4 117 aa11.37□□□□□ -0.59
CUX1-215ENST00000556210 IGHV3-16A0A0C4DH30 117 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 IGHV3-53P01767 116 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 EDN2P20800 178 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 NPC2P61916 151 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 RNASE13Q5GAN3 156 aaKnown RBP11.36□□□□□ -0.59
CUX1-215ENST00000556210 USMG5Q96IX5 58 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 F8W735 103 aaPredicted RBP11.36□□□□□ -0.59
CUX1-215ENST00000556210 Q8N8P6 123 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 C11orf21Q9P2W6 132 aa11.36□□□□□ -0.59
CUX1-215ENST00000556210 CSMD1Q96PZ7 3565 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 FLNBO75369 2602 aaKnown RBP11.35□□□□□ -0.59
CUX1-215ENST00000556210 HECTD1Q9ULT8 2610 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 IGKV2D-26A0A0A0MRZ7 120 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 ZNF493Q6ZR52 646 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 PHLDA1Q8WV24 401 aaPredicted RBP11.35□□□□□ -0.59
CUX1-215ENST00000556210 TMEM190Q8WZ59 177 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 H7C1H1 209 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 PLNP26678 52 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 C12orf74Q32Q52 190 aa11.35□□□□□ -0.59
CUX1-215ENST00000556210 NDUFA4O00483 81 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 ODF1Q14990 250 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 LGALS3P17931 250 aaKnown RBP11.34□□□□□ -0.59
CUX1-215ENST00000556210 CKS1BP61024 79 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 ORMDL2Q53FV1 153 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 C20orf173Q96LM9 149 aa11.34□□□□□ -0.59
CUX1-215ENST00000556210 TP53TG1Q9Y2A0 90 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms