RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 TCRAP04437 139 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 PEA15Q15121 130 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 LYPD5Q6UWN5 251 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 FAM159AQ6UWV7 190 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 DPPA3Q6W0C5 159 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 WFDC10BQ8IUB3 73 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 ARL6IP6Q8N6S5 226 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 TMEM75Q8N9X5 138 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 CMTM2Q8TAZ6 248 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 TREM1Q9NP99 234 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 HHLA3Q9XRX5 114 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 TNFRSF18Q9Y5U5 241 aa6.33□□□□□ -1.4
VIPAS39-207ENST00000555854 TRAV4A0A0B4J268 109 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 TRAV21A0A0B4J279 112 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 SCO2A0A1W2PP80 73 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 SIVA1O15304 175 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 APOC3P02656 99 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 FUSP35637 526 aaKnown RBP eCLIP6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 RPL7L1Q6DKI1 246 aaKnown RBP6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 IQCF2Q8IXL9 164 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 C5orf17Q8NAS9 161 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 SPXQ9BT56 116 aa6.32□□□□□ -1.4
VIPAS39-207ENST00000555854 TRGV4A0A0C4DH28 118 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 M0R2P5 195 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 NDUFS6O75380 124 aaKnown RBP6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 GYPEP15421 78 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 GATA1P15976 413 aaPredicted RBP6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 SLAQ13239 276 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 MRPL23Q16540 153 aaKnown RBP6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 FAM74A1Q5RGS3 127 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 NEGR1Q7Z3B1 354 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 C9orf85Q96MD7 179 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 PSG8Q9UQ74 426 aa6.31□□□□□ -1.4
VIPAS39-207ENST00000555854 SERTM2A0A1B0GWG4 89 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 F8W036 122 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 GCGP01275 180 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 H2AFB1P0C5Y9 115 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 DNAH10OSP0CZ25 163 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 SRIP30626 198 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 SERF2P84101 59 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 PCNPQ8WW12 178 aaKnown RBP6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 LINC00479Q96M42 142 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 NKX6-2Q9C056 277 aaPredicted RBP6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 SDF2L1Q9HCN8 221 aa6.3□□□□□ -1.4
VIPAS39-207ENST00000555854 RNASE3P12724 160 aaKnown RBP6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 SUMO1P63165 101 aaKnown RBP6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 FLI1Q01543 452 aaPredicted RBP6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 Q86TA4 180 aa6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 CYB561D1Q8N8Q1 229 aa6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 OR4C5Q8NGB2 326 aa6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 TMEM167BQ9NRX6 74 aa6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 EPDR1Q9UM22 224 aa6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 PKHD1L1Q86WI1 4243 aa6.29□□□□□ -1.4
VIPAS39-207ENST00000555854 TRAV1-1A0A0B4J248 108 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 TRAV34A0A0B4J273 112 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 IGKV3D-20A0A0C4DH25 116 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 A0A1W2PRE2 83 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 PGPEP1LA6NFU8 196 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 RS1O15537 224 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 CXorf1O96002 111 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 MBP02144 154 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 ORM1P02763 201 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 PFN1P07737 140 aaKnown RBP6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 TAGLN2P37802 199 aaKnown RBP6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 FGF8P55075 233 aaPredicted RBP6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 ZNF506Q5JVG8 444 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 CFAP126Q5VTH2 177 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 PRNTQ86SH4 94 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 MAPKAPK5-AS1Q8N8E1 139 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 CLRN3Q8NCR9 226 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 KCNS1Q96KK3 526 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 ACTR3CQ9C0K3 210 aaPredicted RBP6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 ARL2-SNX15V9GYD0 113 aa6.28□□□□□ -1.4
VIPAS39-207ENST00000555854 IGHV3-73A0A0B4J1V6 119 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 CTXND1A0A1B0GTU2 59 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 LOC105371267A0A1B0GV96 52 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 FBLL1A6NHQ2 334 aaKnown RBP6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 C9JCJ5 164 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 LINC00694P0DN24 101 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 TIRAPP58753 221 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 UBE2G2P60604 165 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 SLC25A29Q8N8R3 303 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 KRTAP4-12Q9BQ66 201 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 NDFIP1Q9BT67 221 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 SMCO4Q9NRQ5 59 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 TMA7Q9Y2S6 64 aaKnown RBP6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 LY96Q9Y6Y9 160 aa6.27□□□□□ -1.41
VIPAS39-207ENST00000555854 A0A087WTM6 91 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 A6NJY4 79 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 FAM74A7A6NL05 159 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 PEX7O00628 323 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 CRIP1P50238 77 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 ZNF876PQ49A33 203 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 SMUG1Q53HV7 270 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 AKR1C8PQ5T2L2 129 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 UFSP1Q6NVU6 142 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 Q6ZSN1 163 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 Q8N1X5 172 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 PTH2Q96A98 100 aa6.26□□□□□ -1.41
VIPAS39-207ENST00000555854 TXNDC17Q9BRA2 123 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms