RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 SIP14410 1827 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 MCM3APO60318 1980 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 TMEM218A2RU14 115 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 APOC4-APOC2K7ER74 178 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 SNCGO76070 127 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 APOC2P02655 101 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 POLR2JP52435 117 aaKnown RBP2.38□□□□□ -2.03
VRK1-203ENST00000555067 KRTAP12-4P60329 112 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 HSD52Q0P140 79 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 C9orf153Q5TBE3 101 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 SPANXN1Q5VSR9 72 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 CSAG1Q6PB30 78 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 GBF1Q92538 1859 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 RPRMQ9NS64 109 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 TMEM106BQ9NUM4 274 aa2.38□□□□□ -2.03
VRK1-203ENST00000555067 PLXNA2O75051 1894 aa2.37□□□□□ -2.03
VRK1-203ENST00000555067 NRKQ7Z2Y5 1582 aa2.37□□□□□ -2.03
VRK1-203ENST00000555067 MYOFQ9NZM1 2061 aa2.37□□□□□ -2.03
VRK1-203ENST00000555067 TRAV2A0A0B4J234 112 aa2.37□□□□□ -2.03
VRK1-203ENST00000555067 NDUFB6O95139 128 aa2.37□□□□□ -2.03
VRK1-203ENST00000555067 TFF1P04155 84 aa2.37□□□□□ -2.03
VRK1-203ENST00000555067 C8orf59Q8N0T1 100 aaPredicted RBP2.37□□□□□ -2.03
VRK1-203ENST00000555067 TNRC6AQ8NDV7 1962 aaKnown RBP2.36□□□□□ -2.03
VRK1-203ENST00000555067 TRAV30A0A087WSZ9 112 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 OOSP1A8MZH6 123 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 SLC25A6P12236 298 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 PIPP12273 146 aaPredicted RBP2.36□□□□□ -2.03
VRK1-203ENST00000555067 RHOHQ15669 191 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 IQCJQ1A5X6 159 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 UNQ5815/PRO19632Q6UWF5 114 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 ACBD7Q8N6N7 88 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 C10orf105Q8TEF2 133 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 PTPRMP28827 1452 aa2.36□□□□□ -2.03
VRK1-203ENST00000555067 ARFGEF3Q5TH69 2177 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 TMEM30CPA0ZSE6 113 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 NUPR1O60356 82 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 PPYP01298 95 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 SPRNQ5BIV9 151 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 S100A7L2Q5SY68 101 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 NCMAPQ5T1S8 102 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 LYPD5Q6UWN5 251 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 PPDPFLQ8WWR9 84 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 LINC00526Q96FQ7 95 aa2.35□□□□□ -2.03
VRK1-203ENST00000555067 DNAL4O96015 105 aa2.34□□□□□ -2.03
VRK1-203ENST00000555067 SVBPQ8N300 66 aa2.34□□□□□ -2.03
VRK1-203ENST00000555067 TSKUQ8WUA8 353 aa2.34□□□□□ -2.03
VRK1-203ENST00000555067 TMEM141Q96I45 108 aa2.34□□□□□ -2.03
VRK1-203ENST00000555067 DSCR8Q96T75 97 aa2.34□□□□□ -2.03
VRK1-203ENST00000555067 PTPRDP23468 1912 aa2.34□□□□□ -2.04
VRK1-203ENST00000555067 CHD3Q12873 2000 aaKnown RBP2.34□□□□□ -2.04
VRK1-203ENST00000555067 MAPKBP1O60336 1514 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 TRGV2A0A075B6R0 118 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 CXorf51AA0A1B0GTR3 108 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 M0R143 59 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 IFNA17P01571 189 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 SPINK8P0C7L1 97 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 IFITM1P13164 125 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 NPC2P61916 151 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 INSL4Q14641 139 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 MPV17LQ2QL34 196 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 SLC48A1Q6P1K1 146 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 LINC00299Q6ZSB3 139 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 Q8N8P6 123 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 ZNF625Q96I27 306 aaPredicted RBP2.33□□□□□ -2.04
VRK1-203ENST00000555067 SPANXDQ9BXN6 97 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 FBN1P35555 2871 aaKnown RBP2.33□□□□□ -2.04
VRK1-203ENST00000555067 MUC22E2RYF6 1773 aaPredicted RBP2.33□□□□□ -2.04
VRK1-203ENST00000555067 HMCN1Q96RW7 5635 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 ABCC10Q5T3U5 1492 aa2.33□□□□□ -2.04
VRK1-203ENST00000555067 ROBO1Q9Y6N7 1651 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 A0A0J9YY99 117 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 NUPR2A6NF83 97 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 JMJD7-PLA2G4BH0Y9G9 81 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 GYPBP06028 91 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 DEFB103AP81534 67 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 KRTAP13-4Q3LI77 160 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 VWDEQ8N2E2 1590 aa2.32□□□□□ -2.04
VRK1-203ENST00000555067 RBBP6Q7Z6E9 1792 aaKnown RBP2.31□□□□□ -2.04
VRK1-203ENST00000555067 COL5A1P20908 1838 aaPredicted RBP2.31□□□□□ -2.04
VRK1-203ENST00000555067 IGLV3-1P01715 115 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 S100A10P60903 97 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 PKIAP61925 76 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 UBE2G1P62253 170 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 C12orf73Q69YU5 71 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 ODF3Q96PU9 254 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 CTTNBP2Q8WZ74 1663 aa2.31□□□□□ -2.04
VRK1-203ENST00000555067 MYO18AQ92614 2054 aaKnown RBP2.3□□□□□ -2.04
VRK1-203ENST00000555067 IGKV3-7A0A075B6H7 116 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 HCRTO43612 131 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 MRPS14O60783 128 aaKnown RBP2.3□□□□□ -2.04
VRK1-203ENST00000555067 RBM3P98179 157 aaKnown RBP2.3□□□□□ -2.04
VRK1-203ENST00000555067 RPL7L1Q6DKI1 246 aaKnown RBP2.3□□□□□ -2.04
VRK1-203ENST00000555067 WFDC10AQ9H1F0 79 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 MRPL36Q9P0J6 103 aaKnown RBP2.3□□□□□ -2.04
VRK1-203ENST00000555067 ZNF609O15014 1411 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 DAPK1P53355 1430 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 LAMB1P07942 1786 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 AKAP12Q02952 1782 aa2.3□□□□□ -2.04
VRK1-203ENST00000555067 TNRC6BQ9UPQ9 1833 aaKnown RBP2.3□□□□□ -2.04
VRK1-203ENST00000555067 EXPH5Q8NEV8 1989 aa2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms