RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PMCHL1Q16048 86 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 TDRG1Q3Y452 100 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 AMTNQ6UX39 209 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 PHLDA3Q9Y5J5 127 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 TIMM8BQ9Y5J9 83 aaPredicted RBP19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 TRAV12-3A0A0B4J271 114 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 NCR2O95944 276 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 IGKV3-20P01619 116 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 PRO1933Q9H354 126 aa19.56■□□□□ 0.72
CCDC88C-205ENST00000553403 FN1P02751 2386 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-205ENST00000553403 LEPROTL1O95214 131 aa19.55■□□□□ 0.72
CCDC88C-205ENST00000553403 BTF3P20290 206 aaKnown RBP19.55■□□□□ 0.72
CCDC88C-205ENST00000553403 SPAG8Q99932 426 aaPredicted RBP19.55■□□□□ 0.72
CCDC88C-205ENST00000553403 OR4C46A6NHA9 309 aa19.54■□□□□ 0.72
CCDC88C-205ENST00000553403 HLA-DRB4P13762 266 aa19.54■□□□□ 0.72
CCDC88C-205ENST00000553403 MAP1LC3AQ9H492 121 aa19.54■□□□□ 0.72
CCDC88C-205ENST00000553403 HLA-DRB4X5D2U9 266 aa19.54■□□□□ 0.72
CCDC88C-205ENST00000553403 LOC389332A0A1B0GUA5 103 aa19.53■□□□□ 0.72
CCDC88C-205ENST00000553403 NXPH4O95158 308 aa19.53■□□□□ 0.72
CCDC88C-205ENST00000553403 PROK1P58294 105 aa19.53■□□□□ 0.72
CCDC88C-205ENST00000553403 CD300EQ496F6 205 aaPredicted RBP19.53■□□□□ 0.72
CCDC88C-205ENST00000553403 CRLF1O75462 422 aa19.52■□□□□ 0.72
CCDC88C-205ENST00000553403 KNCNA6PVL3 124 aa19.52■□□□□ 0.71
CCDC88C-205ENST00000553403 M0R381 172 aa19.52■□□□□ 0.71
CCDC88C-205ENST00000553403 TNFRSF6BO95407 300 aa19.52■□□□□ 0.71
CCDC88C-205ENST00000553403 SPINK13Q1W4C9 94 aa19.52■□□□□ 0.71
CCDC88C-205ENST00000553403 HSPB8Q9UJY1 196 aa19.52■□□□□ 0.71
CCDC88C-205ENST00000553403 H3BMM0 161 aa19.51■□□□□ 0.71
CCDC88C-205ENST00000553403 MRAP2Q96G30 205 aa19.51■□□□□ 0.71
CCDC88C-205ENST00000553403 TMEM70Q9BUB7 260 aa19.51■□□□□ 0.71
CCDC88C-205ENST00000553403 MAP6D1Q9H9H5 199 aa19.51■□□□□ 0.71
CCDC88C-205ENST00000553403 TRAV12-2A0A075B6T6 113 aa19.5■□□□□ 0.71
CCDC88C-205ENST00000553403 KIR2DL5BA0A0G2JN68 375 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 KIR2DL5BA0A0G2JPC4 375 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 LINC01546A6NGU7 62 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 CD7P09564 240 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 KIR2DL5AQ8N109 375 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 OR2K2Q8NGT1 345 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 DPH3P1Q9H4G8 78 aa19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 NXT2Q9NPJ8 142 aaKnown RBP19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 ZNF256Q9Y2P7 627 aaPredicted RBP19.49■□□□□ 0.71
CCDC88C-205ENST00000553403 IGHV1OR15-1A0A075B7D0 117 aa19.48■□□□□ 0.71
CCDC88C-205ENST00000553403 PRSS47A8MTI9 375 aa19.48■□□□□ 0.71
CCDC88C-205ENST00000553403 CRXO43186 299 aaPredicted RBP19.48■□□□□ 0.71
CCDC88C-205ENST00000553403 GAS8-AS1O95177 125 aa19.48■□□□□ 0.71
CCDC88C-205ENST00000553403 DEFB125Q8N687 156 aa19.48■□□□□ 0.71
CCDC88C-205ENST00000553403 VAMP8Q9BV40 100 aa19.48■□□□□ 0.71
CCDC88C-205ENST00000553403 DDTP30046 118 aa19.47■□□□□ 0.71
CCDC88C-205ENST00000553403 AP1S3Q96PC3 154 aa19.47■□□□□ 0.71
CCDC88C-205ENST00000553403 IGHV3-16A0A0C4DH30 117 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 LINC00173Q6ZV60 143 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 PRIMA1Q86XR5 153 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 NRACQ8N912 160 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 C9orf85Q96MD7 179 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 ADARB2-AS1A8MUL3 147 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 SPRY2O43597 315 aa19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 GATA1P15976 413 aaPredicted RBP19.46■□□□□ 0.71
CCDC88C-205ENST00000553403 JMJD1CQ15652 2540 aa19.45■□□□□ 0.7
CCDC88C-205ENST00000553403 SYS1-DBNDD2H3BUS1 97 aa19.45■□□□□ 0.7
CCDC88C-205ENST00000553403 C20orf144Q9BQM9 153 aa19.45■□□□□ 0.7
CCDC88C-205ENST00000553403 MAP1LC3CQ9BXW4 147 aa19.45■□□□□ 0.7
CCDC88C-205ENST00000553403 A0A096LNJ9 63 aa19.44■□□□□ 0.7
CCDC88C-205ENST00000553403 CLUHP3Q96NS8 147 aa19.44■□□□□ 0.7
CCDC88C-205ENST00000553403 PET117Q6UWS5 81 aa19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 POM121L12Q8N7R1 296 aa19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 Q8N8P6 123 aa19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 ZNF747Q9BV97 191 aa19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 RBMY1BA6NDE4 496 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 RBMY1EA6NEQ0 496 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 HBDP02042 147 aa19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 RBMY1DP0C7P1 496 aaKnown RBP19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 C14orf178Q8N769 122 aaPredicted RBP19.43■□□□□ 0.7
CCDC88C-205ENST00000553403 TRGV11A0A075B6L2 103 aa19.42■□□□□ 0.7
CCDC88C-205ENST00000553403 C20orf202A1L168 122 aa19.42■□□□□ 0.7
CCDC88C-205ENST00000553403 Q8N1Y9 231 aa19.42■□□□□ 0.7
CCDC88C-205ENST00000553403 TRAV26-2A0A0B4J265 109 aa19.41■□□□□ 0.7
CCDC88C-205ENST00000553403 ZNF124Q15973 351 aa19.41■□□□□ 0.7
CCDC88C-205ENST00000553403 PAM16Q9Y3D7 125 aa19.41■□□□□ 0.7
CCDC88C-205ENST00000553403 IGLV2-18A0A075B6J9 118 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 FXYD7P58549 80 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 SPATA12Q7Z6I5 190 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 NDUFA11Q86Y39 141 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 KIF25-AS1Q9Y6Z4 181 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 ODF3L2Q3SX64 289 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 SYT8Q8NBV8 401 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 MDFICQ9P1T7 246 aa19.4■□□□□ 0.7
CCDC88C-205ENST00000553403 AGRNO00468 2067 aa19.39■□□□□ 0.69
CCDC88C-205ENST00000553403 CMC4P56277 68 aaPredicted RBP19.39■□□□□ 0.69
CCDC88C-205ENST00000553403 NSUN5P1Q3KNT7 163 aa19.39■□□□□ 0.69
CCDC88C-205ENST00000553403 SMIM17P0DL12 118 aa19.38■□□□□ 0.69
CCDC88C-205ENST00000553403 PPP1R17O96001 155 aa19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 MGPP08493 103 aa19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 RBMY1A1P0DJD3 496 aaKnown RBP19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 RBMY1CP0DJD4 496 aa19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 DEFA6Q01524 100 aa19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 RBMY1FQ15415 496 aaKnown RBP19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 C20orf78Q9BR46 151 aa19.37■□□□□ 0.69
CCDC88C-205ENST00000553403 FCER1GP30273 86 aa19.36■□□□□ 0.69
CCDC88C-205ENST00000553403 RASL10AQ92737 203 aa19.36■□□□□ 0.69
CCDC88C-205ENST00000553403 NDUFAF3Q9BU61 184 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms