RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FAM223BA6NKX1 122 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 H3BUX3 64 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 RIPPLY3P57055 190 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 SAMD5Q5TGI4 173 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 FAM223AQ8IWN6 122 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 PHLDA1Q8WV24 401 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-213ENST00000552720 HIGD1BQ9P298 99 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 FBN2P35556 2912 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 SUMO2P61956 95 aaKnown RBP5.66□□□□□ -1.5
LIMA1-213ENST00000552720 CEND1Q8N111 149 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 OR10J6PQ8NGY7 276 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 PHLDA3Q9Y5J5 127 aa5.66□□□□□ -1.5
LIMA1-213ENST00000552720 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-213ENST00000552720 K7ERU9 68 aa5.65□□□□□ -1.5
LIMA1-213ENST00000552720 RNASE3P12724 160 aaKnown RBP5.65□□□□□ -1.5
LIMA1-213ENST00000552720 LINC00477Q96M19 166 aa5.65□□□□□ -1.5
LIMA1-213ENST00000552720 JPT2Q9H910 190 aa5.65□□□□□ -1.5
LIMA1-213ENST00000552720 SMPXQ9UHP9 88 aa5.65□□□□□ -1.5
LIMA1-213ENST00000552720 TEX15Q9BXT5 2789 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 TRAV21A0A0B4J279 112 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 NDUFA4O00483 81 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 FABP2P12104 132 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 ASIPP42127 132 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 MRAP2Q96G30 205 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 SCGB3A1Q96QR1 104 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 DPH3P1Q9H4G8 78 aa5.65□□□□□ -1.51
LIMA1-213ENST00000552720 PIEZO1Q92508 2521 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 F8VRH5 84 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 CRIP2P52943 208 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-213ENST00000552720 RHPN1-AS1Q9BWJ2 59 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 TM2D2Q9BX73 214 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 OVOL1O14753 267 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 AVPP01185 164 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 IGHG2P01859 326 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 EMP1P54849 157 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 C10orf99Q6UWK7 81 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 C2orf66Q6UXQ4 117 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 NEXN-AS1Q8NBZ9 246 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 TOMM6Q96B49 74 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 FAM19A4Q96LR4 140 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 LENEPQ9Y5L5 61 aa5.64□□□□□ -1.51
LIMA1-213ENST00000552720 DOPEY1Q5JWR5 2465 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 IGHV4-30-2A0A087WSY4 118 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 G3V4G9 280 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 H7C1H1 209 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 PLNP26678 52 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 MTURNQ8N3F0 131 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 BAALCQ8WXS3 180 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 CREBBPQ92793 2442 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 A0A087WWL8 130 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 A6NDX4 124 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 DUSP14O95147 198 aaKnown RBP5.63□□□□□ -1.51
LIMA1-213ENST00000552720 GHRHP01286 108 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 HLA-DRB4P13762 266 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 TNP2Q05952 138 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 ORMDL2Q53FV1 153 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 AMTNQ6UX39 209 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 OR5A1Q8NGJ0 315 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 HIST1H4GQ99525 98 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 CSTL1Q9H114 145 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 CYSLTR1Q9Y271 337 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 HLA-DRB4X5D2U9 266 aa5.63□□□□□ -1.51
LIMA1-213ENST00000552720 IGLL5B9A064 214 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 IGKV3-20P01619 116 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 LINC00315P59091 139 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 COTL1Q14019 142 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 C12orf74Q32Q52 190 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 C10orf105Q8TEF2 133 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 NRGNQ92686 78 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 NF1P21359 2839 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 NIPBLQ6KC79 2804 aaeCLIP5.62□□□□□ -1.51
LIMA1-213ENST00000552720 ZFYVE26Q68DK2 2539 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 TRBV7-3A0A075B6L6 115 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 TRAV12-1A0A0B4J245 112 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 TRAV12-3A0A0B4J271 114 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 TEX48A0A1B0GUV7 120 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 PRSS29PA6NIE9 313 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 OR11H12B2RN74 326 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 TSHBP01222 138 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 RPL39P62891 51 aaKnown RBP5.62□□□□□ -1.51
LIMA1-213ENST00000552720 RPL24P83731 157 aaKnown RBP5.62□□□□□ -1.51
LIMA1-213ENST00000552720 KLHL30-AS1Q8NEE0 82 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 OR11H1Q8NG94 326 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 OR11H2Q8NH07 326 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 PLEKHB2Q96CS7 222 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 ATP6V0BQ99437 205 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 C20orf78Q9BR46 151 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 PIMREGQ9BSJ6 248 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 KIF25-AS1Q9Y6Z4 181 aa5.62□□□□□ -1.51
LIMA1-213ENST00000552720 TRAV12-2A0A075B6T6 113 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 MYMXA0A1B0GTQ4 84 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 E9PLD3 99 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 H3BMG7 143 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 IGLV1-40P01703 118 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 CRYGDP07320 174 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 LGALS1P09382 135 aaKnown RBP5.61□□□□□ -1.51
LIMA1-213ENST00000552720 PSMG4Q5JS54 123 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 APRG1Q8IVJ8 170 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 USMG5Q96IX5 58 aa5.61□□□□□ -1.51
LIMA1-213ENST00000552720 ZNF479Q96JC4 524 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms