RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 IGHV3-38A0A0C4DH36 116 aa12.58□□□□□ -0.39
CUX1-213ENST00000549414 KLF5Q13887 457 aaPredicted RBP12.58□□□□□ -0.39
CUX1-213ENST00000549414 RPL36AP83881 106 aaKnown RBP12.58□□□□□ -0.4
CUX1-213ENST00000549414 RPL36ALQ969Q0 106 aaKnown RBP12.58□□□□□ -0.4
CUX1-213ENST00000549414 TRAV13-1A0A0B4J241 112 aa12.58□□□□□ -0.4
CUX1-213ENST00000549414 NPSP0C0P6 89 aa12.57□□□□□ -0.4
CUX1-213ENST00000549414 COX11Q9Y6N1 276 aa12.57□□□□□ -0.4
CUX1-213ENST00000549414 CENPEQ02224 2701 aa12.57□□□□□ -0.4
CUX1-213ENST00000549414 ODF3BA8MYP8 253 aa12.57□□□□□ -0.4
CUX1-213ENST00000549414 ELANEP08246 267 aa12.57□□□□□ -0.4
CUX1-213ENST00000549414 SLURP1P55000 103 aa12.57□□□□□ -0.4
CUX1-213ENST00000549414 ADARB2-AS1A8MUL3 147 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 ESDP10768 282 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 UBE2V1Q13404 147 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 KIR2DL5BA0A0G2JN68 375 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 KIR2DL5BA0A0G2JPC4 375 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 LGALS9BQ3B8N2 356 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 LGALS9CQ6DKI2 356 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 KIR2DL5AQ8N109 375 aa12.56□□□□□ -0.4
CUX1-213ENST00000549414 RPL39LQ96EH5 51 aaKnown RBP12.55□□□□□ -0.4
CUX1-213ENST00000549414 PRORYQ9H606 182 aa12.55□□□□□ -0.4
CUX1-213ENST00000549414 GDF5OSQ5U4N7 250 aa12.55□□□□□ -0.4
CUX1-213ENST00000549414 TRPT1Q86TN4 253 aaKnown RBP12.55□□□□□ -0.4
CUX1-213ENST00000549414 C11orf68Q9H3H3 251 aaKnown RBP12.55□□□□□ -0.4
CUX1-213ENST00000549414 USP24Q9UPU5 2620 aa12.55□□□□□ -0.4
CUX1-213ENST00000549414 CD5LO43866 347 aa12.55□□□□□ -0.4
CUX1-213ENST00000549414 MRAPQ8TCY5 172 aa12.55□□□□□ -0.4
CUX1-213ENST00000549414 ZNF625Q96I27 306 aaPredicted RBP12.55□□□□□ -0.4
CUX1-213ENST00000549414 YPEL4Q96NS1 127 aa12.55□□□□□ -0.4
CUX1-213ENST00000549414 C19orf71A6NCJ1 209 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 COX8AP10176 69 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 MALP21145 153 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 C16orf54Q6UWD8 224 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 C1QTNF4Q9BXJ3 329 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 CCDC140Q96MF4 163 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 H3BUA1 57 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 CRYGBP07316 175 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 ZNF80P51504 273 aaPredicted RBP12.54□□□□□ -0.4
CUX1-213ENST00000549414 RNASE13Q5GAN3 156 aaKnown RBP12.54□□□□□ -0.4
CUX1-213ENST00000549414 PCP2Q8IVA1 136 aa12.54□□□□□ -0.4
CUX1-213ENST00000549414 CMC4P56277 68 aaPredicted RBP12.53□□□□□ -0.4
CUX1-213ENST00000549414 LINC01549A6NIU2 74 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 GAGE12JA6NER3 117 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 GAGE1Q13065 139 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 GAGE4Q13068 117 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 GAGE5Q13069 117 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 GAGE13Q4V321 117 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 APRG1Q8IVJ8 170 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 WDFY4Q6ZS81 3184 aa12.53□□□□□ -0.4
CUX1-213ENST00000549414 UBE2DNLQ8IWF7 75 aa12.52□□□□□ -0.4
CUX1-213ENST00000549414 MTURNQ8N3F0 131 aa12.52□□□□□ -0.4
CUX1-213ENST00000549414 COL4A2P08572 1712 aa12.52□□□□□ -0.4
CUX1-213ENST00000549414 RBAKDNA6NC62 111 aa12.52□□□□□ -0.4
CUX1-213ENST00000549414 ATRQ13535 2644 aa12.52□□□□□ -0.4
CUX1-213ENST00000549414 LY6LH3BQJ8 138 aa12.52□□□□□ -0.41
CUX1-213ENST00000549414 DNAL4O96015 105 aa12.52□□□□□ -0.41
CUX1-213ENST00000549414 LGALS1P09382 135 aaKnown RBP12.52□□□□□ -0.41
CUX1-213ENST00000549414 LURAP1LQ8IV03 231 aa12.52□□□□□ -0.41
CUX1-213ENST00000549414 CRPP02741 224 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 OR5A1Q8NGJ0 315 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 PRADC1Q9BSG0 188 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 PGPEP1Q9NXJ5 209 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 IGHG2P01859 326 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 ANKRD39Q53RE8 183 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 TTTY13Q9BZ97 58 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 CFAP161Q6P656 301 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 COPS9Q8WXC6 57 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 IGHV4OR15-8A0A075B7B6 117 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 A0A087WW49 117 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 TRBV7-9A0A0J9YWB2 115 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 C11orf71Q6IPW1 123 aa12.51□□□□□ -0.41
CUX1-213ENST00000549414 MRPL53Q96EL3 112 aaKnown RBP12.51□□□□□ -0.41
CUX1-213ENST00000549414 MAST4O15021 2626 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 GAGE12BA1L429 117 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 F8VRH5 84 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 GAGE7O76087 117 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 GAGE12FP0CL80 117 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 GAGE12GP0CL81 117 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 GAGE12IP0CL82 117 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 MRPL52Q86TS9 123 aaKnown RBP12.5□□□□□ -0.41
CUX1-213ENST00000549414 MLST8Q9BVC4 326 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 F5H768 121 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 WFDC11Q8NEX6 87 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 ZNRF2Q8NHG8 242 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 TIMM21Q9BVV7 248 aa12.5□□□□□ -0.41
CUX1-213ENST00000549414 PMVKQ15126 192 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 ERG28Q9UKR5 140 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 LOXL1Q08397 574 aaPredicted RBP12.49□□□□□ -0.41
CUX1-213ENST00000549414 ATP6V0BQ99437 205 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 LENEPQ9Y5L5 61 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 TMEM238C9JI98 176 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 CCL24O00175 119 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 PLEKHB2Q96CS7 222 aa12.49□□□□□ -0.41
CUX1-213ENST00000549414 I3L3M4 83 aa12.48□□□□□ -0.41
CUX1-213ENST00000549414 BVES-AS1Q5T3Y7 98 aa12.48□□□□□ -0.41
CUX1-213ENST00000549414 K7ERJ3 54 aa12.48□□□□□ -0.41
CUX1-213ENST00000549414 AZU1P20160 251 aa12.48□□□□□ -0.41
CUX1-213ENST00000549414 LINC00158P58513 81 aa12.47□□□□□ -0.41
CUX1-213ENST00000549414 PRSS29PA6NIE9 313 aa12.47□□□□□ -0.41
CUX1-213ENST00000549414 ZNF843Q8N446 348 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms