RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 FAM210AQ96ND0 272 aa8.69□□□□□ -1.02
PTCH1-218ENST00000548945 TRAV4A0A0B4J268 109 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 OR7C2O60412 319 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 ATP6V1G1O75348 118 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 EIF3GO75821 320 aaKnown RBP eCLIP8.68□□□□□ -1.02
PTCH1-218ENST00000548945 SFTA3P0C7M3 94 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 ARL14EPLP0DKL9 152 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 GCSHP23434 173 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 TAGLN2P37802 199 aaKnown RBP8.68□□□□□ -1.02
PTCH1-218ENST00000548945 TMEM183BQ1AE95 376 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 MUC21Q5SSG8 566 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 FAM159AQ6UWV7 190 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 TMEM183AQ8IXX5 376 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 MANBALQ9NQG1 85 aa8.68□□□□□ -1.02
PTCH1-218ENST00000548945 CRYGDP07320 174 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 GCHFRP30047 84 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 RANP62826 216 aaKnown RBP8.67□□□□□ -1.02
PTCH1-218ENST00000548945 CCL20P78556 96 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 TOR2AQ5JU69 321 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 SMDT1Q9H4I9 107 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 TMEM167BQ9NRX6 74 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 GNG13Q9P2W3 67 aa8.67□□□□□ -1.02
PTCH1-218ENST00000548945 RBFOX3A6NFN3 312 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 DIRC3C9JPN6 131 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 M0R2P5 195 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 BCL2P10415 239 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 UBE2L3P68036 154 aaKnown RBP8.66□□□□□ -1.02
PTCH1-218ENST00000548945 PEA15Q15121 130 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 ARL6IP6Q8N6S5 226 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 NTN5Q8WTR8 489 aaPredicted RBP8.66□□□□□ -1.02
PTCH1-218ENST00000548945 TMEM70Q9BUB7 260 aa8.66□□□□□ -1.02
PTCH1-218ENST00000548945 EIF5A2Q9GZV4 153 aaKnown RBP8.66□□□□□ -1.02
PTCH1-218ENST00000548945 FAM229AH3BQW9 127 aa8.65□□□□□ -1.02
PTCH1-218ENST00000548945 ZNF506Q5JVG8 444 aa8.65□□□□□ -1.02
PTCH1-218ENST00000548945 OR4C5Q8NGB2 326 aa8.65□□□□□ -1.02
PTCH1-218ENST00000548945 TREM1Q9NP99 234 aa8.65□□□□□ -1.02
PTCH1-218ENST00000548945 VAX2Q9UIW0 290 aa8.65□□□□□ -1.02
PTCH1-218ENST00000548945 ARL2-SNX15V9GYD0 113 aa8.65□□□□□ -1.02
PTCH1-218ENST00000548945 IGHV3-38A0A0C4DH36 116 aa8.64□□□□□ -1.03
PTCH1-218ENST00000548945 LRCOL1A6NCL2 159 aa8.64□□□□□ -1.03
PTCH1-218ENST00000548945 NDUFS6O75380 124 aaKnown RBP8.64□□□□□ -1.03
PTCH1-218ENST00000548945 GATA1P15976 413 aaPredicted RBP8.64□□□□□ -1.03
PTCH1-218ENST00000548945 S100A1P23297 94 aa8.64□□□□□ -1.03
PTCH1-218ENST00000548945 LINC01556Q5JQF7 62 aa8.64□□□□□ -1.03
PTCH1-218ENST00000548945 SUN5Q8TC36 379 aa8.64□□□□□ -1.03
PTCH1-218ENST00000548945 OTORQ9NRC9 128 aa8.64□□□□□ -1.03
PTCH1-218ENST00000548945 IGLV5-52A0A0A0MRZ9 124 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 TRAV21A0A0B4J279 112 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 IGHV3-16A0A0C4DH30 117 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 PSCAO43653 123 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 CIDEAO60543 219 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 SRSF3P84103 164 aaKnown RBP8.63□□□□□ -1.03
PTCH1-218ENST00000548945 CMTM2Q8TAZ6 248 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 KCNS1Q96KK3 526 aa8.63□□□□□ -1.03
PTCH1-218ENST00000548945 IBA57-AS1B1ANH7 110 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 KRBOX1C9JBD0 128 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 GNRH2O43555 120 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 PAGE4O60829 102 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 SMR3BP02814 79 aaPredicted RBP8.62□□□□□ -1.03
PTCH1-218ENST00000548945 PFN1P07737 140 aaKnown RBP8.62□□□□□ -1.03
PTCH1-218ENST00000548945 MEF2BQ02080 365 aaPredicted RBP8.62□□□□□ -1.03
PTCH1-218ENST00000548945 Q6ZSN1 163 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 NHLRC2Q8NBF2 726 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 SDF2L1Q9HCN8 221 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 NAGKQ9UJ70 344 aa8.62□□□□□ -1.03
PTCH1-218ENST00000548945 TRAV8-6A0A0B4J262 113 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 LOC100131303A0A0U1RQF7 123 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 A0A1W2PRE2 83 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 TMEM218A2RU14 115 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 PGPA6NDG6 321 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 FAM74A7A6NL05 159 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 UBE2G2P60604 165 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 CST9LP1Q5W188 147 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 Q8N814 137 aa8.61□□□□□ -1.03
PTCH1-218ENST00000548945 NKX6-2Q9C056 277 aaPredicted RBP8.61□□□□□ -1.03
PTCH1-218ENST00000548945 FBLL1A6NHQ2 334 aaKnown RBP8.6□□□□□ -1.03
PTCH1-218ENST00000548945 TMEM250H0YL14 139 aa8.6□□□□□ -1.03
PTCH1-218ENST00000548945 PDE6DO43924 150 aa8.6□□□□□ -1.03
PTCH1-218ENST00000548945 TYMSP04818 313 aa8.6□□□□□ -1.03
PTCH1-218ENST00000548945 SRP19P09132 144 aaKnown RBP8.6□□□□□ -1.03
PTCH1-218ENST00000548945 LAGE3Q14657 143 aa8.6□□□□□ -1.03
PTCH1-218ENST00000548945 GOLT1AQ6ZVE7 132 aa8.6□□□□□ -1.03
PTCH1-218ENST00000548945 DNAH8Q96JB1 4490 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 TRBV6-4A0A1B0GX49 114 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 C9JQL5 133 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 F6UZH7 168 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 RHOHQ15669 191 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 SLC25A29Q8N8R3 303 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 TVP23CQ96ET8 276 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 TCEAL7Q9BRU2 100 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 PRADC1Q9BSG0 188 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 SEC11CQ9BY50 192 aa8.59□□□□□ -1.03
PTCH1-218ENST00000548945 SERTM2A0A1B0GWG4 89 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 F8W036 122 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 RS1O15537 224 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 ZNF876PQ49A33 203 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 OR10J3Q5JRS4 329 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 LELP1Q5T871 98 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 CFAP126Q5VTH2 177 aa8.58□□□□□ -1.04
PTCH1-218ENST00000548945 CYB561D1Q8N8Q1 229 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms