RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 OR2D3Q8NGH3 330 aa9.74□□□□□ -0.85
PTCH1-213ENST00000546820 NUDT11Q96G61 164 aa9.74□□□□□ -0.85
PTCH1-213ENST00000546820 H3BVH4 76 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 K7EN84 100 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 CIDEAO60543 219 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 MED14OSP0DP75 135 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 RPL19P84098 196 aaKnown RBP9.73□□□□□ -0.85
PTCH1-213ENST00000546820 SLAQ13239 276 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 OR4C5Q8NGB2 326 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 NAT8Q9UHE5 227 aa9.73□□□□□ -0.85
PTCH1-213ENST00000546820 ERVFC1-1P60608 527 aa9.72□□□□□ -0.85
PTCH1-213ENST00000546820 UQCC3Q6UW78 93 aa9.72□□□□□ -0.85
PTCH1-213ENST00000546820 FAM231DQ6ZW35 169 aa9.72□□□□□ -0.85
PTCH1-213ENST00000546820 LINC01551Q86U37 167 aa9.72□□□□□ -0.85
PTCH1-213ENST00000546820 ZNF575Q86XF7 245 aa9.72□□□□□ -0.85
PTCH1-213ENST00000546820 IGHV4-4A0A075B6R2 117 aa9.71□□□□□ -0.86
PTCH1-213ENST00000546820 TRAV4A0A0B4J268 109 aa9.71□□□□□ -0.86
PTCH1-213ENST00000546820 GATCO43716 136 aaKnown RBP9.71□□□□□ -0.86
PTCH1-213ENST00000546820 ZFP82Q8N141 532 aa9.71□□□□□ -0.86
PTCH1-213ENST00000546820 RNASE7Q9H1E1 156 aaKnown RBP9.71□□□□□ -0.86
PTCH1-213ENST00000546820 RPP21Q9H633 154 aaKnown RBP9.71□□□□□ -0.86
PTCH1-213ENST00000546820 SCRT2Q9NQ03 307 aa9.71□□□□□ -0.86
PTCH1-213ENST00000546820 TRGV4A0A0C4DH28 118 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 A0A1W2PPQ1 181 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 A8MWV9 139 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 F2Z2F3 143 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 IGHV3-53P01767 116 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 OR5AL1P0C617 328 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 SFTA3P0C7M3 94 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 C15orf54Q8N8G6 183 aa9.7□□□□□ -0.86
PTCH1-213ENST00000546820 SSBP4Q9BWG4 385 aaPredicted RBP9.7□□□□□ -0.86
PTCH1-213ENST00000546820 A8MWL6 223 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 M0R381 172 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 RS1O15537 224 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 RPL23P62829 140 aaKnown RBP9.69□□□□□ -0.86
PTCH1-213ENST00000546820 ADIRFQ15847 76 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 SPANXN1Q5VSR9 72 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 DMRTA1Q5VZB9 504 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 TMEM88Q6PEY1 159 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 FER1L6-AS1Q8NA97 138 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 C15orf53Q8NAA6 179 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 TPPP3Q9BW30 176 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 OSTCQ9NRP0 149 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 HHLA3Q9XRX5 114 aa9.69□□□□□ -0.86
PTCH1-213ENST00000546820 LINC00862A6NCI5 91 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 H3BNG1 76 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 SNAI2O43623 268 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 GZMBP10144 247 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 HOXA5P20719 270 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 CFAP126Q5VTH2 177 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 ZNF479Q96JC4 524 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 PRO0255Q9UI72 69 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 APLNQ9ULZ1 77 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 MUC4Q99102 2169 aa9.68□□□□□ -0.86
PTCH1-213ENST00000546820 TRAV26-1A0A087WT03 109 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 PAX4O43316 350 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 CACNG7P62955 275 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 FHL2Q14192 279 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 CT83Q5H943 113 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 COMMD7Q86VX2 200 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 POM121L12Q8N7R1 296 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 OR10G8Q8NGN5 311 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 ISOC2Q96AB3 205 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 SFRP2Q96HF1 295 aa9.67□□□□□ -0.86
PTCH1-213ENST00000546820 A0A0J9YY99 117 aa9.66□□□□□ -0.86
PTCH1-213ENST00000546820 IGLC6P0CF74 106 aa9.66□□□□□ -0.86
PTCH1-213ENST00000546820 SSTP61278 116 aa9.66□□□□□ -0.86
PTCH1-213ENST00000546820 PNRC1Q12796 327 aaPredicted RBP9.66□□□□□ -0.86
PTCH1-213ENST00000546820 WDR73Q6P4I2 378 aa9.66□□□□□ -0.86
PTCH1-213ENST00000546820 ZFP2Q6ZN57 461 aa9.66□□□□□ -0.86
PTCH1-213ENST00000546820 TMEM218A2RU14 115 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 RHODO00212 210 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 NUDT3O95989 172 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 CRYBA4P53673 196 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 LYZL1Q6UWQ5 148 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 OR10AG1Q8NH19 301 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 GFRA4Q9GZZ7 299 aa9.65□□□□□ -0.86
PTCH1-213ENST00000546820 DNAH7Q8WXX0 4024 aa9.65□□□□□ -0.87
PTCH1-213ENST00000546820 MUC21A0A0G2JKD1 596 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 MUC21A0A140T8X8 626 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 FAM231BA6NCW3 169 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 F8W036 122 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 NXPH4O95158 308 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 SMIM17P0DL12 118 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 GATA1P15976 413 aaPredicted RBP9.64□□□□□ -0.87
PTCH1-213ENST00000546820 FOXA3P55318 350 aaPredicted RBP9.64□□□□□ -0.87
PTCH1-213ENST00000546820 TSKUQ8WUA8 353 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 BORCS7Q96B45 105 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 PRADC1Q9BSG0 188 aa9.64□□□□□ -0.87
PTCH1-213ENST00000546820 IGHV3-73A0A0B4J1V6 119 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 TRBV6-4A0A1B0GX49 114 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 PPP1R2P9O14990 202 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 P0DMU3 169 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 FAM231AP0DMU4 169 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 FAM231CP0DMU5 169 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 MRPL23Q16540 153 aaKnown RBP9.63□□□□□ -0.87
PTCH1-213ENST00000546820 JPT2Q9H910 190 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 ICOSQ9Y6W8 199 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 V9GYV3 84 aa9.63□□□□□ -0.87
PTCH1-213ENST00000546820 TENM2Q9NT68 2774 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms