RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 RBX1P62877 108 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 RPL32P62910 135 aaKnown RBP3.71□□□□□ -1.82
CLIP1-217ENST00000543205 HIST1H1AQ02539 215 aaPredicted RBP3.71□□□□□ -1.82
CLIP1-217ENST00000543205 FAM74A1Q5RGS3 127 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 MORN3Q6PF18 240 aaPredicted RBP3.71□□□□□ -1.82
CLIP1-217ENST00000543205 DPPA3Q6W0C5 159 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 TRPT1Q86TN4 253 aaKnown RBP3.71□□□□□ -1.82
CLIP1-217ENST00000543205 LYPD1Q8N2G4 141 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 EXOC3-AS1Q8N2X6 119 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 OR10J6PQ8NGY7 276 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 FAM213BQ8TBF2 198 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 PHYHIPLQ96FC7 376 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 MRAP2Q96G30 205 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 TP53TG1Q9Y2A0 90 aa3.71□□□□□ -1.82
CLIP1-217ENST00000543205 A0A1B0GWB2 263 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 MAP1LC3B2A6NCE7 125 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 H7C1H1 209 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 ZNF705DP0CH99 300 aaPredicted RBP3.7□□□□□ -1.82
CLIP1-217ENST00000543205 ZNF705BP0CI00 300 aaPredicted RBP3.7□□□□□ -1.82
CLIP1-217ENST00000543205 PRB4P10163 310 aaPredicted RBP3.7□□□□□ -1.82
CLIP1-217ENST00000543205 RAB5CP51148 216 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 GDF5OSQ5U4N7 250 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 OR8A1Q8NGG7 326 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 SFT2D1Q8WV19 159 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 MAP1LC3BQ9GZQ8 125 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 Q9H3A6 140 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 TMEM167BQ9NRX6 74 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 DNAH3Q8TD57 4116 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 RYR3Q15413 4870 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 FAM240AA0A1B0GVK7 77 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 PGPA6NDG6 321 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 FXYD7P58549 80 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 FLI1Q01543 452 aaPredicted RBP3.7□□□□□ -1.82
CLIP1-217ENST00000543205 LINC00242Q5T6M2 205 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 CMTM2Q8TAZ6 248 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 RXFP4Q8TDU9 374 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 TM2D3Q9BRN9 247 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 C1QTNF4Q9BXJ3 329 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 OTORQ9NRC9 128 aa3.7□□□□□ -1.82
CLIP1-217ENST00000543205 PRAC2D3DTV9 90 aa3.69□□□□□ -1.82
CLIP1-217ENST00000543205 M0R3E3 92 aa3.69□□□□□ -1.82
CLIP1-217ENST00000543205 RBMY1A1P0DJD3 496 aaKnown RBP3.69□□□□□ -1.82
CLIP1-217ENST00000543205 SULT1A2P50226 295 aa3.69□□□□□ -1.82
CLIP1-217ENST00000543205 HNRNPA3P51991 378 aaKnown RBP3.69□□□□□ -1.82
CLIP1-217ENST00000543205 DEFB135Q30KP9 77 aa3.69□□□□□ -1.82
CLIP1-217ENST00000543205 FAM19A5Q7Z5A7 132 aaPredicted RBP3.69□□□□□ -1.82
CLIP1-217ENST00000543205 MBD3L1Q8WWY6 194 aa3.69□□□□□ -1.82
CLIP1-217ENST00000543205 A0A1B0GV50 99 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 A0A1W2PRE2 83 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 AMBPP02760 352 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 SLC25A5P05141 298 aaKnown RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 OR5AL1P0C617 328 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 RAB5AP20339 215 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 S100A1P23297 94 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 TSPOP30536 169 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 RPL18AQ02543 176 aaKnown RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 ERCC8Q13216 396 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 TMEM78Q5T7P6 136 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 ALKAL2Q6UX46 152 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 LINC00477Q96M19 166 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 NKX6-2Q9C056 277 aaPredicted RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 SLC35B3Q9H1N7 401 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 SPANXB1Q9NS25 103 aaPredicted RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 XCL2Q9UBD3 114 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 U3KQK5 164 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 IGKV2-40A0A087WW87 121 aaPredicted RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 RBAKDNA6NC62 111 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 A8MTW9 85 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 M0R2Z0 102 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 CRXO43186 299 aaPredicted RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 IFNA7P01567 189 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 IGKV2D-40P01614 121 aaPredicted RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 GIG44P09565 113 aaPredicted RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 CT45A10P0DMU9 189 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 SPINK13Q1W4C9 94 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 AMTNQ6UX39 209 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 Q6ZN92 141 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 C5orf17Q8NAS9 161 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 AGPAT4-IT1Q9H0P7 198 aa3.68□□□□□ -1.82
CLIP1-217ENST00000543205 YTHDF2Q9Y5A9 579 aaKnown RBP3.68□□□□□ -1.82
CLIP1-217ENST00000543205 TRAV12-2A0A075B6T6 113 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 IGHV3OR16-12A0A075B7B8 117 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 TRAV1-1A0A0B4J248 108 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 INSP01308 110 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 GNG5P63218 68 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 C9orf47Q6ZRZ4 202 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 GOLT1AQ6ZVE7 132 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 OR11H2Q8NH07 326 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 IGF2BP2-AS1Q96M15 143 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 ODF3Q96PU9 254 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 VGLL1Q99990 258 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 EPDR1Q9UM22 224 aa3.67□□□□□ -1.82
CLIP1-217ENST00000543205 IGLV5-37A0A075B6J1 123 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 GGTLC3B5MD39 225 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 F6UZH7 168 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 TCRAP04437 139 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 ZNF138P52744 262 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 SMAGPQ0VAQ4 97 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 FAM231DQ6ZW35 169 aa3.66□□□□□ -1.82
CLIP1-217ENST00000543205 NIT1Q86X76 327 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms