RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 M0R036 132 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 NUDT3O95989 172 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 GNG4P50150 75 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 SLAQ13239 276 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 ZNF876PQ49A33 203 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 CENPWQ5EE01 88 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 PTH2Q96A98 100 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 SMIM12Q96EX1 92 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 C9orf85Q96MD7 179 aa8.69□□□□□ -1.02
VPS33A-207ENST00000542790 A0A0J9YY99 117 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 C9JCJ5 164 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 IGHV3-53P01767 116 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 RNASE3P12724 160 aaKnown RBP8.68□□□□□ -1.02
VPS33A-207ENST00000542790 ZNF506Q5JVG8 444 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 DNLZQ5SXM8 178 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 OR4C5Q8NGB2 326 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 IL36BQ9NZH7 164 aa8.68□□□□□ -1.02
VPS33A-207ENST00000542790 TRAV4A0A0B4J268 109 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 TRGV4A0A0C4DH28 118 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 RAB19A4D1S5 217 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 TMEM250H0YL14 139 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 FHL2Q14192 279 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 RNF212Q495C1 297 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 PIK3CD-AS1Q5SR53 167 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 LCE3BQ5TA77 95 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 PRR27Q6MZM9 219 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 POM121L12Q8N7R1 296 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 EIF5A2Q9GZV4 153 aaKnown RBP8.67□□□□□ -1.02
VPS33A-207ENST00000542790 BIN3Q9NQY0 253 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 PRO0255Q9UI72 69 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 HHLA3Q9XRX5 114 aa8.67□□□□□ -1.02
VPS33A-207ENST00000542790 DYNC2H1Q8NCM8 4307 aaKnown RBP8.66□□□□□ -1.02
VPS33A-207ENST00000542790 TMSB15BA0A087X1C1 80 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 GRIFINA4D1Z8 144 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 CIDEAO60543 219 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 IGLV2-8P01709 118 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 ARMS2P0C7Q2 107 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 MGST1P10620 155 aaKnown RBP8.66□□□□□ -1.02
VPS33A-207ENST00000542790 UBE2DNLQ8IWF7 75 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 DAZAP1Q96EP5 407 aaKnown RBP8.66□□□□□ -1.02
VPS33A-207ENST00000542790 ZNF479Q96JC4 524 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 FAM210AQ96ND0 272 aa8.66□□□□□ -1.02
VPS33A-207ENST00000542790 PLECQ15149 4684 aaKnown RBP8.65□□□□□ -1.02
VPS33A-207ENST00000542790 TRBV20OR9-2A0A075B6H5 130 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 PGPEP1LA6NFU8 196 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 H3BVH4 76 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 NDUFS6O75380 124 aaKnown RBP8.65□□□□□ -1.02
VPS33A-207ENST00000542790 SFTA3P0C7M3 94 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 CRYBA4P53673 196 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 CCL18P55774 89 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 TOR2AQ5JU69 321 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 ZNF575Q86XF7 245 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 SYT8Q8NBV8 401 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 VSIG2Q96IQ7 327 aa8.65□□□□□ -1.02
VPS33A-207ENST00000542790 A8MWV9 139 aa8.64□□□□□ -1.03
VPS33A-207ENST00000542790 RS1O15537 224 aa8.64□□□□□ -1.03
VPS33A-207ENST00000542790 CXCL1P09341 107 aa8.64□□□□□ -1.03
VPS33A-207ENST00000542790 FAM3BP58499 235 aaPredicted RBP8.64□□□□□ -1.03
VPS33A-207ENST00000542790 CFAP126Q5VTH2 177 aa8.64□□□□□ -1.03
VPS33A-207ENST00000542790 SCRT2Q9NQ03 307 aa8.64□□□□□ -1.03
VPS33A-207ENST00000542790 PHLDA3Q9Y5J5 127 aa8.64□□□□□ -1.03
VPS33A-207ENST00000542790 MED14OSP0DP75 135 aa8.63□□□□□ -1.03
VPS33A-207ENST00000542790 RPL19P84098 196 aaKnown RBP8.63□□□□□ -1.03
VPS33A-207ENST00000542790 PARLQ9H300 379 aa8.63□□□□□ -1.03
VPS33A-207ENST00000542790 C19orf71A6NCJ1 209 aa8.62□□□□□ -1.03
VPS33A-207ENST00000542790 P01737 135 aa8.62□□□□□ -1.03
VPS33A-207ENST00000542790 CEBPGP53567 150 aa8.62□□□□□ -1.03
VPS33A-207ENST00000542790 RPS20P60866 119 aaKnown RBP8.62□□□□□ -1.03
VPS33A-207ENST00000542790 MRPL23Q16540 153 aaKnown RBP8.62□□□□□ -1.03
VPS33A-207ENST00000542790 ZFP82Q8N141 532 aa8.62□□□□□ -1.03
VPS33A-207ENST00000542790 OCC1Q8TAD7 63 aa8.62□□□□□ -1.03
VPS33A-207ENST00000542790 PCNPQ8WW12 178 aaKnown RBP8.62□□□□□ -1.03
VPS33A-207ENST00000542790 ICOSQ9Y6W8 199 aa8.62□□□□□ -1.03
VPS33A-207ENST00000542790 A0A096LPF7 62 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 XKRY2A2RUG3 117 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 M0R381 172 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 GATA1P15976 413 aaPredicted RBP8.61□□□□□ -1.03
VPS33A-207ENST00000542790 ZFP2Q6ZN57 461 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 OR2D3Q8NGH3 330 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 RYR3Q15413 4870 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 SACSQ9NZJ4 4579 aa8.61□□□□□ -1.03
VPS33A-207ENST00000542790 TRBV6-4A0A1B0GX49 114 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 SRP19P09132 144 aaKnown RBP8.6□□□□□ -1.03
VPS33A-207ENST00000542790 OR5AL1P0C617 328 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 RAB14P61106 215 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 PEA15Q15121 130 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 ESRGQ1W209 222 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 SMDT1Q9H4I9 107 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 LINC00588Q9Y4M8 146 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 LY96Q9Y6Y9 160 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 RYR2Q92736 4967 aa8.6□□□□□ -1.03
VPS33A-207ENST00000542790 ALMS1Q8TCU4 4167 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 IGHV3-73A0A0B4J1V6 119 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 ZNF727A8MUV8 499 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 K7EQD1 137 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 RHODO00212 210 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 SNAI2O43623 268 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 GYPEP15421 78 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 SRIP30626 198 aa8.59□□□□□ -1.03
VPS33A-207ENST00000542790 NEGR1Q7Z3B1 354 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms