RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 CD300EQ496F6 205 aaPredicted RBP10.28□□□□□ -0.76
PTPN1-202ENST00000541713 AMTNQ6UX39 209 aa10.28□□□□□ -0.76
PTPN1-202ENST00000541713 PEF1Q9UBV8 284 aaKnown RBP10.28□□□□□ -0.76
PTPN1-202ENST00000541713 ARL6IP6Q8N6S5 226 aa10.28□□□□□ -0.76
PTPN1-202ENST00000541713 LAGE3Q14657 143 aa10.28□□□□□ -0.76
PTPN1-202ENST00000541713 CYSLTR1Q9Y271 337 aa10.28□□□□□ -0.76
PTPN1-202ENST00000541713 LINC01559Q495D7 138 aa10.27□□□□□ -0.76
PTPN1-202ENST00000541713 SFTPCP11686 197 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 NXT2Q9NPJ8 142 aaKnown RBP10.27□□□□□ -0.77
PTPN1-202ENST00000541713 U3KQK5 164 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 A6NDN8 102 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 ASIPP42127 132 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 SYNJ2BPP57105 145 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 GPHB5Q86YW7 130 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 DPF1Q92782 380 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 HIST1H4GQ99525 98 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 SPCS1Q9Y6A9 102 aa10.27□□□□□ -0.77
PTPN1-202ENST00000541713 DPM2O94777 84 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 SPINK13Q1W4C9 94 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 KLHL30-AS1Q8NEE0 82 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 ZNF48Q96MX3 618 aaPredicted RBP10.26□□□□□ -0.77
PTPN1-202ENST00000541713 BEX4Q9NWD9 120 aaPredicted RBP10.26□□□□□ -0.77
PTPN1-202ENST00000541713 RBX1P62877 108 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 RPL39P62891 51 aaKnown RBP10.26□□□□□ -0.77
PTPN1-202ENST00000541713 BOD1L2Q8IYS8 172 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 CHAC1Q9BUX1 264 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 NBEAL2Q6ZNJ1 2754 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 OPRPNQ99935 248 aaPredicted RBP10.26□□□□□ -0.77
PTPN1-202ENST00000541713 CSTL1Q9H114 145 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 MEGF9Q9H1U4 602 aa10.26□□□□□ -0.77
PTPN1-202ENST00000541713 TRBV25-1A0A075B6N4 114 aa10.25□□□□□ -0.77
PTPN1-202ENST00000541713 KNCNA6PVL3 124 aa10.25□□□□□ -0.77
PTPN1-202ENST00000541713 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.25□□□□□ -0.77
PTPN1-202ENST00000541713 RAB9AP51151 201 aa10.25□□□□□ -0.77
PTPN1-202ENST00000541713 Q8N8P6 123 aa10.25□□□□□ -0.77
PTPN1-202ENST00000541713 MUC4Q99102 2169 aa10.25□□□□□ -0.77
PTPN1-202ENST00000541713 PPBPP02775 128 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 DEFB112Q30KQ8 113 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 OCIAD2Q56VL3 154 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 FAM159AQ6UWV7 190 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 SCGB1D4Q6XE38 83 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 ZFAND2AQ8N6M9 145 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 SRSF1Q07955 248 aaKnown RBP eCLIP10.24□□□□□ -0.77
PTPN1-202ENST00000541713 NRACQ8N912 160 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 GATD1Q8NB37 220 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 HHLA3Q9XRX5 114 aa10.24□□□□□ -0.77
PTPN1-202ENST00000541713 ITPR3Q14573 2671 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 TRAV21A0A0B4J279 112 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 MSMBP08118 114 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 DUSP14O95147 198 aaKnown RBP10.23□□□□□ -0.77
PTPN1-202ENST00000541713 SUMO2P61956 95 aaKnown RBP10.23□□□□□ -0.77
PTPN1-202ENST00000541713 HSD52Q0P140 79 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 ZNF56Q15929 161 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 RNASE13Q5GAN3 156 aaKnown RBP10.23□□□□□ -0.77
PTPN1-202ENST00000541713 RASL10AQ92737 203 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 MDFICQ9P1T7 246 aa10.23□□□□□ -0.77
PTPN1-202ENST00000541713 RNF223E7ERA6 249 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 C2orf66Q6UXQ4 117 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 C9orf139Q6ZV77 190 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 H7C2G1 150 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 SMIM13P0DJ93 91 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 SAMD5Q5TGI4 173 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 ADAMTSL5Q6ZMM2 481 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 SMIM2Q9BVW6 85 aa10.22□□□□□ -0.77
PTPN1-202ENST00000541713 IGHV3OR16-12A0A075B7B8 117 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 C18orf65Q6ZTR6 163 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 C10orf105Q8TEF2 133 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 CHTOPQ9Y3Y2 248 aaKnown RBP10.21□□□□□ -0.77
PTPN1-202ENST00000541713 HECTD1Q9ULT8 2610 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 APOMO95445 188 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 TMEM170BQ5T4T1 132 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 C9orf47Q6ZRZ4 202 aa10.21□□□□□ -0.77
PTPN1-202ENST00000541713 C9orf118A6NHY6 69 aa10.2□□□□□ -0.78
PTPN1-202ENST00000541713 SRSF9Q13242 221 aaKnown RBP eCLIP10.2□□□□□ -0.78
PTPN1-202ENST00000541713 DAZ1Q9NQZ3 744 aaKnown RBP10.2□□□□□ -0.78
PTPN1-202ENST00000541713 PRSS29PA6NIE9 313 aa10.2□□□□□ -0.78
PTPN1-202ENST00000541713 FABP2P12104 132 aa10.2□□□□□ -0.78
PTPN1-202ENST00000541713 SEC11AP67812 179 aa10.2□□□□□ -0.78
PTPN1-202ENST00000541713 A0A1W2PRX2 142 aa10.2□□□□□ -0.78
PTPN1-202ENST00000541713 OR11H12B2RN74 326 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 ATP5LO75964 103 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 GTF2H5Q6ZYL4 71 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 OR11H1Q8NG94 326 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 OR11H2Q8NH07 326 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 TP53TG1Q9Y2A0 90 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 FAM223BA6NKX1 122 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 H3BMG7 143 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 SLC25A16P16260 332 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 HIST2H2BCQ6DN03 193 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 FAM223AQ8IWN6 122 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 DPH3P1Q9H4G8 78 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 NDUFA4O00483 81 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 P0DMU3 169 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 FAM231AP0DMU4 169 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 FAM231CP0DMU5 169 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 RNASE3P12724 160 aaKnown RBP10.19□□□□□ -0.78
PTPN1-202ENST00000541713 ITPR2Q14571 2701 aa10.19□□□□□ -0.78
PTPN1-202ENST00000541713 IGLV2-18A0A075B6J9 118 aa10.18□□□□□ -0.78
PTPN1-202ENST00000541713 LOC107984156A0A0G2JMH3 177 aa10.18□□□□□ -0.78
PTPN1-202ENST00000541713 ARL17AQ8IVW1 177 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms