RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SUN5Q8TC36 379 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 SGK494Q96LW2 274 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 WFDC1Q9HC57 220 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 COX11Q9Y6N1 276 aa8.94□□□□□ -0.98
SS18-204ENST00000539244 IGLV2-11P01706 119 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 ARL14EPLP0DKL9 152 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 KRTAP10-4P60372 401 aaPredicted RBP8.93□□□□□ -0.98
SS18-204ENST00000539244 SCXQ7RTU7 201 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 DAZ4Q86SG3 579 aaKnown RBP8.93□□□□□ -0.98
SS18-204ENST00000539244 TMEM75Q8N9X5 138 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 S100ZQ8WXG8 99 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 PARLQ9H300 379 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 DAZ3Q9NR90 486 aaKnown RBP8.93□□□□□ -0.98
SS18-204ENST00000539244 PSG8Q9UQ74 426 aa8.93□□□□□ -0.98
SS18-204ENST00000539244 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.92□□□□□ -0.98
SS18-204ENST00000539244 A0A087WWC5 75 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 A8MWV9 139 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 GGTLC3B5MD39 225 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 INMT-MINDY4F8WBC2 141 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 K7EQM0 130 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 LECT2O14960 151 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 STAG3L2P0CL84 134 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 STAG3L3P0CL85 134 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 SMUG1Q53HV7 270 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 SERTAD4-AS1Q5TG53 156 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 UFSP1Q6NVU6 142 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 OR10G9Q8NGN4 311 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 OR10G7Q8NGN6 311 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 LINC00479Q96M42 142 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 MARVELD1Q9BSK0 173 aa8.92□□□□□ -0.98
SS18-204ENST00000539244 HMGB3O15347 200 aaKnown RBP8.91□□□□□ -0.98
SS18-204ENST00000539244 UPK1BO75841 260 aa8.91□□□□□ -0.98
SS18-204ENST00000539244 CDC34P49427 236 aaPredicted RBP8.91□□□□□ -0.98
SS18-204ENST00000539244 FLI1Q01543 452 aaPredicted RBP8.91□□□□□ -0.98
SS18-204ENST00000539244 ZFP69Q49AA0 526 aa8.91□□□□□ -0.98
SS18-204ENST00000539244 CYB561D1Q8N8Q1 229 aa8.91□□□□□ -0.98
SS18-204ENST00000539244 FAT3Q8TDW7 4589 aa8.91□□□□□ -0.98
SS18-204ENST00000539244 IGKV3D-20A0A0C4DH25 116 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 RNF222A6NCQ9 220 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 GAGE12JA6NER3 117 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 FGF8P55075 233 aaPredicted RBP8.9□□□□□ -0.98
SS18-204ENST00000539244 GAGE1Q13065 139 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 GAGE4Q13068 117 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 GAGE5Q13069 117 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 GAGE13Q4V321 117 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 Q8N976 141 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 OR2G3Q8NGZ4 309 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 BAALCQ8WXS3 180 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 RMI2Q96E14 147 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 CHAC1Q9BUX1 264 aa8.9□□□□□ -0.98
SS18-204ENST00000539244 OXTP01178 125 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 SEC11BP0C7V7 166 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 GCHFRP30047 84 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 IFITM3Q01628 133 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 LINC01620Q4KN68 170 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 SAPCD1Q5SSQ6 148 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 PRNTQ86SH4 94 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 RAB24Q969Q5 203 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 Q9UF83 564 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 EPDR1Q9UM22 224 aa8.89□□□□□ -0.99
SS18-204ENST00000539244 PKHD1L1Q86WI1 4243 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 RBFOX3A6NFN3 312 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 SUMO1P63165 101 aaKnown RBP8.88□□□□□ -0.99
SS18-204ENST00000539244 NIT1Q86X76 327 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 SYT8Q8NBV8 401 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 OR2T35Q8NGX2 323 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 PSMG3Q9BT73 122 aaPredicted RBP8.88□□□□□ -0.99
SS18-204ENST00000539244 SAMD10Q9BYL1 202 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 IL36BQ9NZH7 164 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 HMCN2Q8NDA2 5059 aa8.88□□□□□ -0.99
SS18-204ENST00000539244 SSNA1O43805 119 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 S100A4P26447 101 aaKnown RBP8.87□□□□□ -0.99
SS18-204ENST00000539244 LGALSLQ3ZCW2 172 aaPredicted RBP8.87□□□□□ -0.99
SS18-204ENST00000539244 DNLZQ5SXM8 178 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 ATRAIDQ6UW56 229 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 C14orf178Q8N769 122 aaPredicted RBP8.87□□□□□ -0.99
SS18-204ENST00000539244 CIRBP-AS1Q8TBR5 109 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 CHCHD7Q9BUK0 85 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 JPT2Q9H910 190 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 TMEM167BQ9NRX6 74 aa8.87□□□□□ -0.99
SS18-204ENST00000539244 IGKV2D-24A0A075B6R9 120 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 FABP5P3A8MUU1 101 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 RHODO00212 210 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 IGLV2-8P01709 118 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 ASIPP42127 132 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 DNAJC30Q96LL9 226 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 URGCP-MRPS24S4R325 110 aa8.86□□□□□ -0.99
SS18-204ENST00000539244 A0A1W2PRE2 83 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 CXorf1O96002 111 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 MBP02144 154 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 SERF2P84101 59 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 DMRTA1Q5VZB9 504 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 KLK12Q9UKR0 248 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 ARL2-SNX15V9GYD0 113 aa8.85□□□□□ -0.99
SS18-204ENST00000539244 ATP6V0CP27449 155 aa8.84□□□□□ -0.99
SS18-204ENST00000539244 ELOBQ15370 118 aa8.84□□□□□ -0.99
SS18-204ENST00000539244 HSD17B11Q8NBQ5 300 aa8.84□□□□□ -0.99
SS18-204ENST00000539244 H3BVH4 76 aa8.83□□□□□ -1
SS18-204ENST00000539244 Q0VG73 95 aa8.83□□□□□ -1
SS18-204ENST00000539244 COX8CQ7Z4L0 72 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms