RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 IGHV3-64A0A075B6Q5 118 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 IGKV2-40A0A087WW87 121 aaPredicted RBP3.99□□□□□ -1.77
CD44-237ENST00000534082 A0A087WWC5 75 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 IGHV3-73A0A0B4J1V6 119 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 C9orf170A2RU37 121 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 H3BP45 60 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 IGKV2D-40P01614 121 aaPredicted RBP3.99□□□□□ -1.77
CD44-237ENST00000534082 LINC00694P0DN24 101 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 RPL35P42766 123 aaKnown RBP3.99□□□□□ -1.77
CD44-237ENST00000534082 UBE2MP61081 183 aaKnown RBP3.99□□□□□ -1.77
CD44-237ENST00000534082 Q0VG73 95 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 ELOBQ15370 118 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 GUK1Q16774 197 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 TMEM78Q5T7P6 136 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 LYZL2Q7Z4W2 148 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 OR10G9Q8NGN4 311 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 TERB2Q8NHR7 220 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 YIPF6Q96EC8 236 aa3.99□□□□□ -1.77
CD44-237ENST00000534082 RTBDNQ9BSG5 229 aaPredicted RBP3.99□□□□□ -1.77
CD44-237ENST00000534082 A0A087WX48 190 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 A0A0B4J2A0 478 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 GAGE12JA6NER3 117 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 K7EQM0 130 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 COX7A2P2O60397 106 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 PPBPP02775 128 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 TBPP20226 339 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 AKR1D1P51857 326 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 CNBPP62633 177 aaKnown RBP3.98□□□□□ -1.77
CD44-237ENST00000534082 SLC38A11Q08AI6 406 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 FOXI1Q12951 378 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 GAGE4Q13068 117 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 GAGE5Q13069 117 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 SRSF9Q13242 221 aaKnown RBP eCLIP3.98□□□□□ -1.77
CD44-237ENST00000534082 FAM159AQ6UWV7 190 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 ZNF546Q86UE3 836 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 CYB561D1Q8N8Q1 229 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 Q8TAT8 98 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 AP3S1Q92572 193 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 CIB3Q96Q77 187 aaPredicted RBP3.98□□□□□ -1.77
CD44-237ENST00000534082 TCEAL7Q9BRU2 100 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 RBM38Q9H0Z9 239 aaKnown RBP3.98□□□□□ -1.77
CD44-237ENST00000534082 SHPKQ9UHJ6 478 aa3.98□□□□□ -1.77
CD44-237ENST00000534082 PGPA6NDG6 321 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 CCDC160A6NGH7 325 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 K7EPK0 472 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 ARPC5O15511 151 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 CRPP02741 224 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 HIST1H1EP10412 219 aaKnown RBP3.97□□□□□ -1.77
CD44-237ENST00000534082 MGST1P10620 155 aaKnown RBP3.97□□□□□ -1.77
CD44-237ENST00000534082 CACNG7P62955 275 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 ZNF266Q14584 549 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 SPANXN5Q5MJ07 72 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 CFAP126Q5VTH2 177 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 ZNF664Q8N3J9 261 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 OR51S1Q8NGJ8 323 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 CHCHD7Q9BUK0 85 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 BIN3Q9NQY0 253 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 ZNF492Q9P255 531 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 PSORS1C2Q9UIG4 136 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 ALG5Q9Y673 324 aa3.97□□□□□ -1.77
CD44-237ENST00000534082 TRBV19A0A075B6N1 114 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 MUC21A0A0G2JKD1 596 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 AGPAT2O15120 278 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 NBEAP1P0C6P0 100 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 INPP1P49441 399 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 ZNF138P52744 262 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 BLOC1S1P78537 153 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 SURF2Q15527 256 aaPredicted RBP3.96□□□□□ -1.78
CD44-237ENST00000534082 C10orf113Q5VZT2 155 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 KCNIP4Q6PIL6 250 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 ENHOQ6UWT2 76 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 LYPD6BQ8NI32 183 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 STOML3Q8TAV4 291 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 RAB2BQ8WUD1 216 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 C14orf144Q96I85 54 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 PFDN5Q99471 154 aa3.96□□□□□ -1.78
CD44-237ENST00000534082 ALKBH7Q9BT30 221 aaPredicted RBP3.96□□□□□ -1.78
CD44-237ENST00000534082 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.95□□□□□ -1.78
CD44-237ENST00000534082 TRBV7-9A0A0J9YWB2 115 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 LINC00862A6NCI5 91 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 GOSR2O14653 212 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 GNRH2O43555 120 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 SYNGR2O43760 224 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 NDUFB4O95168 129 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 SMIM18P0DKX4 95 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 AQP4P55087 323 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 RRAS2P62070 204 aaPredicted RBP3.95□□□□□ -1.78
CD44-237ENST00000534082 ZNF876PQ49A33 203 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 CST9LP1Q5W188 147 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 Q6AWC8 147 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 FAAP20Q6NZ36 180 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 EXOC3-AS1Q8N2X6 119 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 C15orf54Q8N8G6 183 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 PRR26Q8N8Z3 221 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 RAB24Q969Q5 203 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 ATP5SQ99766 215 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 SOSTQ9BQB4 213 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 C20orf85Q9H1P6 137 aa3.95□□□□□ -1.78
CD44-237ENST00000534082 RSL24D1Q9UHA3 163 aaKnown RBP3.95□□□□□ -1.78
CD44-237ENST00000534082 KCNIP3Q9Y2W7 256 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms