RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TRGV4A0A0C4DH28 118 aa13.79□□□□□ -0.2
CPSF1-209ENST00000532725 RAB19A4D1S5 217 aa13.79□□□□□ -0.2
CPSF1-209ENST00000532725 PAX4O43316 350 aa13.79□□□□□ -0.2
CPSF1-209ENST00000532725 IGLV2-8P01709 118 aa13.79□□□□□ -0.2
CPSF1-209ENST00000532725 S100A4P26447 101 aaKnown RBP13.79□□□□□ -0.2
CPSF1-209ENST00000532725 NACAE9PAV3 2078 aa13.79□□□□□ -0.2
CPSF1-209ENST00000532725 A0A096LPF7 62 aa13.78□□□□□ -0.2
CPSF1-209ENST00000532725 GRIFINA4D1Z8 144 aa13.78□□□□□ -0.2
CPSF1-209ENST00000532725 RS1O15537 224 aa13.78□□□□□ -0.2
CPSF1-209ENST00000532725 FAM3BP58499 235 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-209ENST00000532725 ZNF506Q5JVG8 444 aa13.78□□□□□ -0.2
CPSF1-209ENST00000532725 LINC00588Q9Y4M8 146 aa13.78□□□□□ -0.2
CPSF1-209ENST00000532725 TMSB15BA0A087X1C1 80 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 RBFOX3A6NFN3 312 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 ARMS2P0C7Q2 107 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 CCL18P55774 89 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 ESRGQ1W209 222 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 CENPWQ5EE01 88 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 PIK3CD-AS1Q5SR53 167 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 CFAP126Q5VTH2 177 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 SCRT2Q9NQ03 307 aa13.77□□□□□ -0.21
CPSF1-209ENST00000532725 TRBV20OR9-2A0A075B6H5 130 aa13.75□□□□□ -0.21
CPSF1-209ENST00000532725 H3BVH4 76 aa13.75□□□□□ -0.21
CPSF1-209ENST00000532725 CIDEAO60543 219 aa13.75□□□□□ -0.21
CPSF1-209ENST00000532725 GNG4P50150 75 aa13.75□□□□□ -0.21
CPSF1-209ENST00000532725 DMRTA1Q5VZB9 504 aa13.75□□□□□ -0.21
CPSF1-209ENST00000532725 SMIM12Q96EX1 92 aa13.75□□□□□ -0.21
CPSF1-209ENST00000532725 GATA1P15976 413 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-209ENST00000532725 RPL19P84098 196 aaKnown RBP13.74□□□□□ -0.21
CPSF1-209ENST00000532725 PRR27Q6MZM9 219 aa13.74□□□□□ -0.21
CPSF1-209ENST00000532725 TEX261Q6UWH6 196 aa13.74□□□□□ -0.21
CPSF1-209ENST00000532725 ICOSQ9Y6W8 199 aa13.74□□□□□ -0.21
CPSF1-209ENST00000532725 DNAH10Q8IVF4 4471 aa13.74□□□□□ -0.21
CPSF1-209ENST00000532725 MRPL23Q16540 153 aaKnown RBP13.73□□□□□ -0.21
CPSF1-209ENST00000532725 ZNRF2Q8NHG8 242 aa13.73□□□□□ -0.21
CPSF1-209ENST00000532725 CXCL1P09341 107 aa13.72□□□□□ -0.21
CPSF1-209ENST00000532725 MGST1P10620 155 aaKnown RBP13.72□□□□□ -0.21
CPSF1-209ENST00000532725 JPT2Q9H910 190 aa13.72□□□□□ -0.21
CPSF1-209ENST00000532725 IGLV2-18A0A075B6J9 118 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 C19orf71A6NCJ1 209 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 A8MWV9 139 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 TMEM250H0YL14 139 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 K7EQD1 137 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 M0R2N4 97 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 MED14OSP0DP75 135 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 GYPEP15421 78 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 Q6ZR54 194 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 SSBP4Q9BWG4 385 aaPredicted RBP13.71□□□□□ -0.21
CPSF1-209ENST00000532725 PHLDA3Q9Y5J5 127 aa13.71□□□□□ -0.21
CPSF1-209ENST00000532725 IGHV3-73A0A0B4J1V6 119 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 UFSP1Q6NVU6 142 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 ZFP2Q6ZN57 461 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 SLC25A29Q8N8R3 303 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 SYT8Q8NBV8 401 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 FAM210AQ96ND0 272 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 PARLQ9H300 379 aa13.7□□□□□ -0.22
CPSF1-209ENST00000532725 TRBV6-4A0A1B0GX49 114 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 NDUFS6O75380 124 aaKnown RBP13.69□□□□□ -0.22
CPSF1-209ENST00000532725 TOR2AQ5JU69 321 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 LYPD5Q6UWN5 251 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 Q6ZSN1 163 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 OCC1Q8TAD7 63 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 DAZAP1Q96EP5 407 aaKnown RBP13.69□□□□□ -0.22
CPSF1-209ENST00000532725 UPK3BQ9BT76 320 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 SAMD10Q9BYL1 202 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 EIF5A2Q9GZV4 153 aaKnown RBP13.69□□□□□ -0.22
CPSF1-209ENST00000532725 Q9H8V8 135 aa13.69□□□□□ -0.22
CPSF1-209ENST00000532725 LOC100131303A0A0U1RQF7 123 aa13.68□□□□□ -0.22
CPSF1-209ENST00000532725 NEGR1Q7Z3B1 354 aa13.68□□□□□ -0.22
CPSF1-209ENST00000532725 PCNPQ8WW12 178 aaKnown RBP13.68□□□□□ -0.22
CPSF1-209ENST00000532725 SFRP2Q96HF1 295 aa13.68□□□□□ -0.22
CPSF1-209ENST00000532725 BIN3Q9NQY0 253 aa13.68□□□□□ -0.22
CPSF1-209ENST00000532725 MRPS16Q9Y3D3 137 aaKnown RBP13.68□□□□□ -0.22
CPSF1-209ENST00000532725 DNAH2Q9P225 4427 aa13.67□□□□□ -0.22
CPSF1-209ENST00000532725 M0R381 172 aa13.67□□□□□ -0.22
CPSF1-209ENST00000532725 SNAI2O43623 268 aa13.67□□□□□ -0.22
CPSF1-209ENST00000532725 ZFP82Q8N141 532 aa13.67□□□□□ -0.22
CPSF1-209ENST00000532725 NXPH4O95158 308 aa13.66□□□□□ -0.22
CPSF1-209ENST00000532725 CRYGDP07320 174 aa13.66□□□□□ -0.22
CPSF1-209ENST00000532725 OR5AL1P0C617 328 aa13.66□□□□□ -0.22
CPSF1-209ENST00000532725 SRIP30626 198 aa13.66□□□□□ -0.22
CPSF1-209ENST00000532725 OR10AG1Q8NH19 301 aa13.66□□□□□ -0.22
CPSF1-209ENST00000532725 K7EN84 100 aa13.65□□□□□ -0.22
CPSF1-209ENST00000532725 NUDT10Q8NFP7 164 aa13.65□□□□□ -0.22
CPSF1-209ENST00000532725 OR2D3Q8NGH3 330 aa13.65□□□□□ -0.22
CPSF1-209ENST00000532725 NUDT11Q96G61 164 aa13.65□□□□□ -0.22
CPSF1-209ENST00000532725 PRADC1Q9BSG0 188 aa13.65□□□□□ -0.22
CPSF1-209ENST00000532725 EPPK1P58107 5090 aaKnown RBP13.65□□□□□ -0.22
CPSF1-209ENST00000532725 NBDYA0A0U1RRE5 68 aa13.64□□□□□ -0.23
CPSF1-209ENST00000532725 P01737 135 aa13.64□□□□□ -0.23
CPSF1-209ENST00000532725 SRP19P09132 144 aaKnown RBP13.64□□□□□ -0.23
CPSF1-209ENST00000532725 GZMBP10144 247 aa13.64□□□□□ -0.23
CPSF1-209ENST00000532725 RPS20P60866 119 aaKnown RBP13.64□□□□□ -0.23
CPSF1-209ENST00000532725 RHOHQ15669 191 aa13.64□□□□□ -0.23
CPSF1-209ENST00000532725 A0A087WWL8 130 aa13.63□□□□□ -0.23
CPSF1-209ENST00000532725 IGLC6P0CF74 106 aa13.63□□□□□ -0.23
CPSF1-209ENST00000532725 SH2D6Q7Z4S9 175 aa13.63□□□□□ -0.23
CPSF1-209ENST00000532725 FRAS1Q86XX4 4008 aa13.62□□□□□ -0.23
CPSF1-209ENST00000532725 MUC21A0A0G2JKD1 596 aa13.62□□□□□ -0.23
CPSF1-209ENST00000532725 MUC21A0A140T8X8 626 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms