RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 UQCRQO14949 82 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 ARMS2P0C7Q2 107 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 PLNP26678 52 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 MRGPRG-AS1Q2M3A8 158 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 ARL17AQ8IVW1 177 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 TTTY13Q9BZ97 58 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 CHD8Q9HCK8 2581 aa5.7□□□□□ -1.5
HDAC9-227ENST00000523867 TRAV8-1A0A0A6YYK1 113 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 FAM240AA0A1B0GVK7 77 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 LINC01549A6NIU2 74 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 TCL1BO95988 128 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 LYZP61626 148 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 ZFP2Q6ZN57 461 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 Q6ZQT7 251 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 PRNTQ86SH4 94 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 Q86TA4 180 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 LINC00526Q96FQ7 95 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 ATMQ13315 3056 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 TRAV2A0A0B4J234 112 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 SLC25A20O43772 301 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 PRSS1P07477 247 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 LGALS1P09382 135 aaKnown RBP5.69□□□□□ -1.5
HDAC9-227ENST00000523867 PLA2G2AP14555 144 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 HILS1P60008 231 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 PVRIGQ6DKI7 326 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 GOLT1AQ6ZVE7 132 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 FAM57AQ8TBR7 257 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 Q9H8V8 135 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 OTORQ9NRC9 128 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 PIEZO2Q9H5I5 2752 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 DMXL2Q8TDJ6 3036 aa5.69□□□□□ -1.5
HDAC9-227ENST00000523867 IGHV1-8P0DP01 117 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 LOXP28300 417 aaPredicted RBP5.68□□□□□ -1.5
HDAC9-227ENST00000523867 C9orf153Q5TBE3 101 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 EXOC3-AS1Q8N2X6 119 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 NXT2Q9NPJ8 142 aaKnown RBP5.68□□□□□ -1.5
HDAC9-227ENST00000523867 CTSZQ9UBR2 303 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 PLXNB1O43157 2135 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 J3QKU1 62 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 CNTFRP26992 372 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 HERVK_113P63121 156 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 BSPH1Q075Z2 132 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 TMEM155Q4W5P6 130 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 IGFL3Q6UXB1 125 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 LINC01356Q8N9X3 169 aa5.68□□□□□ -1.5
HDAC9-227ENST00000523867 BBC3Q96PG8 261 aaPredicted RBP5.68□□□□□ -1.5
HDAC9-227ENST00000523867 LINC01548A6NM66 108 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 H3BVH4 76 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 PRB4P10163 310 aaPredicted RBP5.67□□□□□ -1.5
HDAC9-227ENST00000523867 HRCT1Q6UXD1 115 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 SRSF12Q8WXF0 261 aaKnown RBP5.67□□□□□ -1.5
HDAC9-227ENST00000523867 FOXC2Q99958 501 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 AAMDCQ9H7C9 122 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 TMEM14CQ9P0S9 112 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 ATRXP46100 2492 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 ROS1P08922 2347 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 AKAP13Q12802 2813 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 TIMM23O14925 209 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 IGLV2-11P01706 119 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 CD7P09564 240 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 IGLC6P0CF74 106 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 MRPL51Q4U2R6 128 aaKnown RBP5.67□□□□□ -1.5
HDAC9-227ENST00000523867 C19orf54Q5BKX5 351 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 C10orf126Q8N4M7 172 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 CHCHD5Q9BSY4 110 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 ADGRG4Q8IZF6 3080 aa5.67□□□□□ -1.5
HDAC9-227ENST00000523867 LGALS9O00182 355 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 GATA1P15976 413 aaPredicted RBP5.66□□□□□ -1.5
HDAC9-227ENST00000523867 HOXD3P31249 432 aaPredicted RBP5.66□□□□□ -1.5
HDAC9-227ENST00000523867 UBE2E1P51965 193 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 NDUFA11Q86Y39 141 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 ZNF843Q8N446 348 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 UBE2E2Q96LR5 201 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 C2orf48Q96LS8 159 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 KAAG1Q9UBP8 84 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 TRAV12-1A0A0B4J245 112 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 TRAV40A0A0B4J280 105 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 HLA-DMBP28068 263 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 CKS2P33552 79 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 DLX1P56177 255 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 EBI3Q14213 229 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 KRTAP3-3Q9BYR6 98 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 KRTAP3-2Q9BYR7 98 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 DYNLRB1Q9NP97 96 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 ANKRD11Q6UB99 2663 aaPredicted RBP5.66□□□□□ -1.5
HDAC9-227ENST00000523867 PKD1L2Q7Z442 2459 aa5.66□□□□□ -1.5
HDAC9-227ENST00000523867 TRBV19A0A075B6N1 114 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 TMSB15BA0A087X1C1 80 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 IGHV1-3A0A0C4DH29 117 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 A0A0G2JNJ9 132 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 KALRNO60229 2985 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 P0DMU3 169 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 FAM231AP0DMU4 169 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 FAM231CP0DMU5 169 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 PRB3Q04118 309 aaPredicted RBP5.65□□□□□ -1.5
HDAC9-227ENST00000523867 TNP2Q05952 138 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 PLGLAQ15195 96 aa5.65□□□□□ -1.5
HDAC9-227ENST00000523867 LCE2DQ5TA82 110 aaPredicted RBP5.65□□□□□ -1.5
HDAC9-227ENST00000523867 RNASE6Q93091 150 aaKnown RBP5.65□□□□□ -1.5
HDAC9-227ENST00000523867 Q9UFV3 132 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms