RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 DEFB130BP0DP73 79 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 DEFB130AP0DP74 79 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 AZU1P20160 251 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 NANOS2P60321 138 aaKnown RBP5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 CT83Q5H943 113 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 ZFAND6Q6FIF0 208 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 CEMP1Q6PRD7 247 aaPredicted RBP5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 Q6ZTC4 211 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 C15orf53Q8NAA6 179 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 NHLRC2Q8NBF2 726 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 C11orf72Q8NBR9 251 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 PHLDA1Q8WV24 401 aaPredicted RBP5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 LYSTQ99698 3801 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 DERL1Q9BUN8 251 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 NAT8Q9UHE5 227 aa5.54□□□□□ -1.52
LIMCH1-222ENST00000515847 PLECQ15149 4684 aaKnown RBP5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 TENM2Q9NT68 2774 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 TRAV4A0A0B4J268 109 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 GAGE12BA1L429 117 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 KRBOX1C9JBD0 128 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 F2Z2F3 143 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 GAGE7O76087 117 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 SRP19P09132 144 aaKnown RBP5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 GAGE12FP0CL80 117 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 GAGE12GP0CL81 117 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 GAGE12IP0CL82 117 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 ZNF80P51504 273 aaPredicted RBP5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 ERVFC1-1P60608 527 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 CACNG7P62955 275 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 TMEM241Q24JQ0 296 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 DNLZQ5SXM8 178 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 FAM231DQ6ZW35 169 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 LINC00612Q8N6U2 182 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 OR2D3Q8NGH3 330 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 PCNPQ8WW12 178 aaKnown RBP5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 RASL10AQ92737 203 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 RPP21Q9H633 154 aaKnown RBP5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 CELA1Q9UNI1 258 aa5.53□□□□□ -1.52
LIMCH1-222ENST00000515847 SACSQ9NZJ4 4579 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 PLAC8L1A1L4L8 177 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 A8MWL6 223 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 H3BVH4 76 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 PPP1R2P9O14990 202 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 GATCO43716 136 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 SMIM17P0DL12 118 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 HTN3P15516 51 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 RPL19P84098 196 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 ADIRFQ15847 76 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 NDUFA5Q16718 116 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 C12orf74Q32Q52 190 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 ZNF876PQ49A33 203 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 CASC10Q5T4H9 136 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 SPANXN1Q5VSR9 72 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 SMIM15Q7Z3B0 74 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 OR4C5Q8NGB2 326 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 C9orf85Q96MD7 179 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 AP1S3Q96PC3 154 aa5.52□□□□□ -1.53
LIMCH1-222ENST00000515847 TRBV20OR9-2A0A075B6H5 130 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 TMSB15BA0A087X1C1 80 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 IGKV3D-20A0A0C4DH25 116 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 TRGV4A0A0C4DH28 118 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 C19orf71A6NCJ1 209 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 FAM231BA6NCW3 169 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 F5H768 121 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 H3BNG1 76 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 PRM2P04554 102 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 OR5AL1P0C617 328 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 SFTA3P0C7M3 94 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 TRGC1P0CF51 173 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 Q6ZTI0 123 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 SH2D6Q7Z4S9 175 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 LINC01551Q86U37 167 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 COMMD7Q86VX2 200 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 FER1L6-AS1Q8NA97 138 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 OSTCQ9NRP0 149 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 MRPL16Q9NX20 251 aaKnown RBP5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 MDFICQ9P1T7 246 aa5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 KMT2CQ8NEZ4 4911 aaKnown RBP5.51□□□□□ -1.53
LIMCH1-222ENST00000515847 IGLL5B9A064 214 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 GNRH2O43555 120 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 SNAI2O43623 268 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 ARMS2P0C7Q2 107 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 CRIP1P50238 77 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 RHOHQ15669 191 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 ZFP2Q6ZN57 461 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 SFRP2Q96HF1 295 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 PRADC1Q9BSG0 188 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 TPPP3Q9BW30 176 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 GFRA4Q9GZZ7 299 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 PRO0255Q9UI72 69 aa5.5□□□□□ -1.53
LIMCH1-222ENST00000515847 IGHV4-4A0A075B6R2 117 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 GRIFINA4D1Z8 144 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 H7C1H1 209 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 M0R381 172 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 IGLV2-8P01709 118 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 MT-ND4LP03901 98 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 S100A8P05109 93 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 P0DMU3 169 aa5.49□□□□□ -1.53
LIMCH1-222ENST00000515847 FAM231AP0DMU4 169 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms