RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 J3QKU1 62 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 PATE4P0C8F1 98 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 COL9A3Q14050 684 aaPredicted RBP4.6□□□□□ -1.67
USF3-204ENST00000496826 IGHV1-3A0A0C4DH29 117 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 IGHV1-8P0DP01 117 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 DEFB103AP81534 67 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 DENND4AQ7Z401 1863 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 SPRY4Q9C004 299 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 HHLA3Q9XRX5 114 aa4.6□□□□□ -1.67
USF3-204ENST00000496826 RSPO4Q2I0M5 234 aaPredicted RBP4.59□□□□□ -1.67
USF3-204ENST00000496826 HIGD1BQ9P298 99 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 NUPR2A6NF83 97 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 GP9P14770 177 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 ADCYAP1P18509 176 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 PRO0628Q9UI54 55 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 IGHV4-4A0A075B6R2 117 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 NDUFA11Q86Y39 141 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 REPIN1Q9BWE0 567 aaKnown RBP4.59□□□□□ -1.67
USF3-204ENST00000496826 DOCK1Q14185 1865 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 OCC1Q8TAD7 63 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 XAGE1AQ9HD64 81 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 UBR2Q8IWV8 1755 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 ZNF726P1Q15940 193 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 ZNF843Q8N446 348 aa4.59□□□□□ -1.67
USF3-204ENST00000496826 WIPF2Q8TF74 440 aaPredicted RBP4.59□□□□□ -1.67
USF3-204ENST00000496826 LOC101059948A0A1B0GTJ6 334 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 TFF3Q07654 80 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 WFDC12Q8WWY7 111 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 CTHRC1Q96CG8 243 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 C3P01024 1663 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 RIMS1Q86UR5 1692 aaKnown RBP4.59□□□□□ -1.68
USF3-204ENST00000496826 CCL24O00175 119 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 LECT2O14960 151 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 ERC2-IT1O76042 136 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 CECR9P0C854 216 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 C19orf48Q6RUI8 117 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 C8orf17Q9NRJ1 99 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 CHCHD2Q9Y6H1 151 aaPredicted RBP4.59□□□□□ -1.68
USF3-204ENST00000496826 LOC285556D6RIA3 1793 aa4.59□□□□□ -1.68
USF3-204ENST00000496826 A0A0A0MQY5 61 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 WI2-2373I1.2A0A1W2PRP0 233 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGHV1-69P01742 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 LOC107984640A0A0U1RRK4 108 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 A0A1B0GU69 56 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 TMEM213A2RRL7 107 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 LRCOL1A6NCL2 159 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 ZNF491Q8N8L2 437 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 NEXN-AS1Q8NBZ9 246 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 TET1Q8NFU7 2136 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGKV1D-8A0A087WSZ0 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGKV6D-21A0A0A0MT36 114 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 TJP1Q07157 1748 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 CSPG4Q6UVK1 2322 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 LTBP4Q8N2S1 1624 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 UCN2Q96RP3 112 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGKV1D-13A0A0B4J2D9 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGKV1-6A0A0C4DH72 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 SPAARA0A1B0GVQ0 90 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGKV1-13P0DP09 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 SPINK13Q1W4C9 94 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 C1orf229Q6ZS94 237 aaPredicted RBP4.58□□□□□ -1.68
USF3-204ENST00000496826 C11orf45Q8TAV5 145 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 USF3Q68DE3 2245 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGHV7-4-1A0A0J9YVY3 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 MYCNOSP40205 109 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 Q6P435 159 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 IGLV1-36A0A0B4J1U3 117 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 HRKO00198 91 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 GLI3P10071 1580 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 OTOGLQ3ZCN5 2332 aa4.58□□□□□ -1.68
USF3-204ENST00000496826 PRO0255Q9UI72 69 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 TRAV7A0A075B6U4 112 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 TRBV7-7A0A0K0K1E9 115 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 NDUFA7O95182 113 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 MAST2Q6P0Q8 1798 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 IGKV1D-37A0A075B6S9 117 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 ATRAIDQ6UW56 229 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 RGPD4Q7Z3J3 1758 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 SCN7AQ01118 1682 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.57□□□□□ -1.68
USF3-204ENST00000496826 MIFP14174 115 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 C11orf71Q6IPW1 123 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 CREBBPQ92793 2442 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 NDUFV3P56181 108 aaKnown RBP4.57□□□□□ -1.68
USF3-204ENST00000496826 KIAA1549Q9HCM3 1950 aa4.57□□□□□ -1.68
USF3-204ENST00000496826 H3BPC8 53 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 ZNF672Q499Z4 452 aaPredicted RBP4.56□□□□□ -1.68
USF3-204ENST00000496826 VPREB3Q9UKI3 123 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 C1QL1O75973 258 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.56□□□□□ -1.68
USF3-204ENST00000496826 TTC28Q96AY4 2481 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 F8P00451 2351 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 A0A1B0GW54 56 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 C17orf98A8MV24 154 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 OVOL3O00110 214 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 PRM2P04554 102 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 CXCL1P09341 107 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 IBA57-AS1B1ANH7 110 aa4.56□□□□□ -1.68
USF3-204ENST00000496826 IGKV2-29A2NJV5 120 aaPredicted RBP4.56□□□□□ -1.68
USF3-204ENST00000496826 CCKP06307 115 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms