RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RASL10AQ92737 203 aa11.47□□□□□ -0.57
SF3A1-209ENST00000496189 C9JCJ5 164 aa11.46□□□□□ -0.57
SF3A1-209ENST00000496189 PEA15Q15121 130 aa11.46□□□□□ -0.57
SF3A1-209ENST00000496189 OR4C5Q8NGB2 326 aa11.46□□□□□ -0.57
SF3A1-209ENST00000496189 PARLQ9H300 379 aa11.46□□□□□ -0.57
SF3A1-209ENST00000496189 SMDT1Q9H4I9 107 aa11.46□□□□□ -0.57
SF3A1-209ENST00000496189 PRO0255Q9UI72 69 aa11.46□□□□□ -0.57
SF3A1-209ENST00000496189 PAX4O43316 350 aa11.45□□□□□ -0.58
SF3A1-209ENST00000496189 DNLZQ5SXM8 178 aa11.45□□□□□ -0.58
SF3A1-209ENST00000496189 HHLA3Q9XRX5 114 aa11.45□□□□□ -0.58
SF3A1-209ENST00000496189 TMSB15BA0A087X1C1 80 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 TRAV4A0A0B4J268 109 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 IGLV2-8P01709 118 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 ZNF876PQ49A33 203 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 PTH2Q96A98 100 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 C9orf85Q96MD7 179 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 IL36BQ9NZH7 164 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 ICOSQ9Y6W8 199 aa11.44□□□□□ -0.58
SF3A1-209ENST00000496189 TRBV20OR9-2A0A075B6H5 130 aa11.43□□□□□ -0.58
SF3A1-209ENST00000496189 SRP19P09132 144 aaKnown RBP11.43□□□□□ -0.58
SF3A1-209ENST00000496189 CXCL1P09341 107 aa11.43□□□□□ -0.58
SF3A1-209ENST00000496189 RNASE3P12724 160 aaKnown RBP11.43□□□□□ -0.58
SF3A1-209ENST00000496189 SYT8Q8NBV8 401 aa11.43□□□□□ -0.58
SF3A1-209ENST00000496189 SMIM7Q9BQ49 75 aa11.43□□□□□ -0.58
SF3A1-209ENST00000496189 XKRY2A2RUG3 117 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 GRIFINA4D1Z8 144 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 H3BVH4 76 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 CIDEAO60543 219 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 P01737 135 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 ARMS2P0C7Q2 107 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 RPS20P60866 119 aaKnown RBP11.42□□□□□ -0.58
SF3A1-209ENST00000496189 PIK3CD-AS1Q5SR53 167 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 PHLDA3Q9Y5J5 127 aa11.42□□□□□ -0.58
SF3A1-209ENST00000496189 IGLV2-18A0A075B6J9 118 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 PGPEP1LA6NFU8 196 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 ZNF727A8MUV8 499 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 SFTA3P0C7M3 94 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 FHL2Q14192 279 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 MRPL23Q16540 153 aaKnown RBP11.41□□□□□ -0.58
SF3A1-209ENST00000496189 FAM74A3Q4VXF1 159 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 OCC1Q8TAD7 63 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 ZNF479Q96JC4 524 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 LY96Q9Y6Y9 160 aa11.41□□□□□ -0.58
SF3A1-209ENST00000496189 M0R2N4 97 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 MED14OSP0DP75 135 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 CRYBA4P53673 196 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 SOHLH1Q5JUK2 328 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 CLLU1Q5K131 121 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 OR2D3Q8NGH3 330 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 VSIG2Q96IQ7 327 aa11.4□□□□□ -0.58
SF3A1-209ENST00000496189 KMT2AQ03164 3969 aa11.4□□□□□ -0.59
SF3A1-209ENST00000496189 C19orf71A6NCJ1 209 aa11.39□□□□□ -0.59
SF3A1-209ENST00000496189 A8MWV9 139 aa11.39□□□□□ -0.59
SF3A1-209ENST00000496189 SRIP30626 198 aa11.39□□□□□ -0.59
SF3A1-209ENST00000496189 RPL19P84098 196 aaKnown RBP11.39□□□□□ -0.59
SF3A1-209ENST00000496189 ZFP82Q8N141 532 aa11.39□□□□□ -0.59
SF3A1-209ENST00000496189 LINC00588Q9Y4M8 146 aa11.39□□□□□ -0.59
SF3A1-209ENST00000496189 MUC4Q99102 2169 aa11.38□□□□□ -0.59
SF3A1-209ENST00000496189 A0A096LPF7 62 aa11.38□□□□□ -0.59
SF3A1-209ENST00000496189 SCRT2Q9NQ03 307 aa11.38□□□□□ -0.59
SF3A1-209ENST00000496189 VPS13DQ5THJ4 4388 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 IFITM2Q01629 132 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 TMEM241Q24JQ0 296 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 LINC00336Q6ZUF6 198 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 NEGR1Q7Z3B1 354 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 SH2D6Q7Z4S9 175 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 NUDT10Q8NFP7 164 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 NUDT11Q96G61 164 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 PRADC1Q9BSG0 188 aa11.37□□□□□ -0.59
SF3A1-209ENST00000496189 K7EN84 100 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 M0R381 172 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 RS1O15537 224 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 OR5AL1P0C617 328 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 GYPEP15421 78 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 ERVFC1-1P60608 527 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 SRSF3P84103 164 aaKnown RBP11.36□□□□□ -0.59
SF3A1-209ENST00000496189 TTC32Q5I0X7 151 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 CFAP126Q5VTH2 177 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 ZNRF2Q8NHG8 242 aa11.36□□□□□ -0.59
SF3A1-209ENST00000496189 RPP21Q9H633 154 aaKnown RBP11.36□□□□□ -0.59
SF3A1-209ENST00000496189 MRPS16Q9Y3D3 137 aaKnown RBP11.36□□□□□ -0.59
SF3A1-209ENST00000496189 DNAH6Q9C0G6 4158 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 ESRGQ1W209 222 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 SPANXN1Q5VSR9 72 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 DMRTA1Q5VZB9 504 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 FAM231DQ6ZW35 169 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 LINC01551Q86U37 167 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 ZNF575Q86XF7 245 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 FER1L6-AS1Q8NA97 138 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 SSBP4Q9BWG4 385 aaPredicted RBP11.35□□□□□ -0.59
SF3A1-209ENST00000496189 RNASE7Q9H1E1 156 aaKnown RBP11.35□□□□□ -0.59
SF3A1-209ENST00000496189 Q9H8V8 135 aa11.35□□□□□ -0.59
SF3A1-209ENST00000496189 NBDYA0A0U1RRE5 68 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 A0A1W2PPQ1 181 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 C9JQL5 133 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 F2Z2F3 143 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 K7EQD1 137 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 RHODO00212 210 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 SNAI2O43623 268 aa11.34□□□□□ -0.59
SF3A1-209ENST00000496189 GATCO43716 136 aaKnown RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms