RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 PRR20CP86479 221 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 PRR20DP86480 221 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 PRR20BP86481 221 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 PRR20AP86496 221 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 C14orf177Q52M58 125 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 SND1-IT1Q9HBX3 110 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 GTF3C1Q12789 2109 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 K7ERJ3 54 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 SPAG11BQ08648 103 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 DAZAP2Q15038 168 aaPredicted RBP10.21□□□□□ -0.78
COL6A3-212ENST00000491769 PPDPFLQ8WWR9 84 aa10.21□□□□□ -0.78
COL6A3-212ENST00000491769 DKK2Q9UBU2 259 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 V9GYV3 84 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 IGHG2P01859 326 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 MP68P56378 58 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 LGALS9BQ3B8N2 356 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 LGALS9CQ6DKI2 356 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 ZFP2Q6ZN57 461 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 LYL1P12980 280 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 HILS1P60008 231 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 ETV2O00321 342 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-212ENST00000491769 INSL3P51460 131 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 ANKRD29Q8N6D5 301 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 RITA1Q96K30 269 aa10.2□□□□□ -0.78
COL6A3-212ENST00000491769 NREPQ16612 68 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 WNK2Q9Y3S1 2297 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 UBE2V1Q13404 147 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 A0A1B0GX51 115 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 TMEM258P61165 79 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 GATA1P15976 413 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-212ENST00000491769 HIGD2BQ4VC39 106 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 GREB1LQ9C091 1923 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-212ENST00000491769 GBF1Q92538 1859 aa10.19□□□□□ -0.78
COL6A3-212ENST00000491769 FAM231DQ6ZW35 169 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 OPRPNQ99935 248 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-212ENST00000491769 WDR81Q562E7 1941 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 PKDREJQ9NTG1 2253 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 LOC105371267A0A1B0GV96 52 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 C16orf54Q6UWD8 224 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 TRBV7-3A0A075B6L6 115 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 Q8N1Y9 231 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 FNDC1Q4ZHG4 1894 aaPredicted RBP10.18□□□□□ -0.78
COL6A3-212ENST00000491769 NDUFA11Q86Y39 141 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 FAM110AQ9BQ89 295 aa10.18□□□□□ -0.78
COL6A3-212ENST00000491769 ZNF726P1Q15940 193 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 LENEPQ9Y5L5 61 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 IGLC2P0DOY2 106 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 IGLC3P0DOY3 106 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 FHL1Q13642 323 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 RIF1Q5UIP0 2472 aaKnown RBP10.17□□□□□ -0.78
COL6A3-212ENST00000491769 C9orf118A6NHY6 69 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 ROS1P08922 2347 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 A0A096LNI7 61 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 Q8N9W7 124 aa10.17□□□□□ -0.78
COL6A3-212ENST00000491769 DLEU1O43261 78 aa10.16□□□□□ -0.78
COL6A3-212ENST00000491769 GAGE12HA6NDE8 117 aa10.16□□□□□ -0.78
COL6A3-212ENST00000491769 A0A087WZ39 114 aa10.16□□□□□ -0.78
COL6A3-212ENST00000491769 ANK1P16157 1881 aa10.16□□□□□ -0.78
COL6A3-212ENST00000491769 HIGD2AQ9BW72 106 aa10.16□□□□□ -0.78
COL6A3-212ENST00000491769 IFITM1P13164 125 aa10.15□□□□□ -0.78
COL6A3-212ENST00000491769 IGKV4-1P06312 121 aa10.15□□□□□ -0.78
COL6A3-212ENST00000491769 IGFL2Q6UWQ7 119 aa10.15□□□□□ -0.78
COL6A3-212ENST00000491769 ZNF664Q8N3J9 261 aa10.15□□□□□ -0.78
COL6A3-212ENST00000491769 POLR3KQ9Y2Y1 108 aaPredicted RBP10.15□□□□□ -0.78
COL6A3-212ENST00000491769 COX8AP10176 69 aa10.15□□□□□ -0.78
COL6A3-212ENST00000491769 DAND5Q8N907 189 aa10.15□□□□□ -0.78
COL6A3-212ENST00000491769 CFC1BP0CG36 223 aa10.15□□□□□ -0.79
COL6A3-212ENST00000491769 CFC1P0CG37 223 aa10.15□□□□□ -0.79
COL6A3-212ENST00000491769 MRPL52Q86TS9 123 aaKnown RBP10.15□□□□□ -0.79
COL6A3-212ENST00000491769 NTN5Q8WTR8 489 aaPredicted RBP10.15□□□□□ -0.79
COL6A3-212ENST00000491769 DIRC1Q969H9 104 aa10.15□□□□□ -0.79
COL6A3-212ENST00000491769 TRAV26-1A0A087WT03 109 aa10.15□□□□□ -0.79
COL6A3-212ENST00000491769 IGLL1P15814 213 aa10.15□□□□□ -0.79
COL6A3-212ENST00000491769 CRYGDP07320 174 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 IGF2-ASQ6U949 168 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 C11orf52Q96A22 123 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 SPATA25Q9BR10 227 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 IGLV11-55A0A075B6I3 123 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 M0R2N4 97 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 CCL25O15444 150 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 ETDBQ3ZM63 59 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 PRSS47A8MTI9 375 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 C11orf53Q8IXP5 236 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 DOCK9Q9BZ29 2069 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 DEFB131BA0A096LNP1 70 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 UBE2D1P51668 147 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 LYPD6BQ8NI32 183 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 PRO0255Q9UI72 69 aa10.14□□□□□ -0.79
COL6A3-212ENST00000491769 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.13□□□□□ -0.79
COL6A3-212ENST00000491769 A0A0J9YXV3 536 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 CASC2Q6XLA1 102 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 PTPRDP23468 1912 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 I3L2K1 104 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 LY6G6CO95867 125 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 C9JQL5 133 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 IGKV1-17P01599 117 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 SHISA2Q6UWI4 295 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 H3BMG7 143 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 CTSGP08311 255 aa10.13□□□□□ -0.79
COL6A3-212ENST00000491769 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms