RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 TMEM14CQ9P0S9 112 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 IGHV4-39P01824 125 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 ATP5J2P56134 94 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 CFHR4Q92496 578 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 KAAG1Q9UBP8 84 aa9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 ZNF256Q9Y2P7 627 aaPredicted RBP9.59□□□□□ -0.87
SHROOM3-208ENST00000486758 FN1P02751 2386 aaKnown RBP9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 ACANP16112 2415 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 HERVK_113P61574 105 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 DLX4Q92988 240 aaPredicted RBP9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 SS18L2Q9UHA2 77 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 FSTL3O95633 263 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 HERV-K104P63124 156 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 CRYGCP07315 174 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 PRADC1Q9BSG0 188 aa9.58□□□□□ -0.88
SHROOM3-208ENST00000486758 NPC2P61916 151 aa9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 LYPD1Q8N2G4 141 aa9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 LYRM7Q5U5X0 104 aa9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 DUX5Q96PT3 197 aa9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 SPANXB1Q9NS25 103 aaPredicted RBP9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 TRAV2A0A0B4J234 112 aa9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 RRN3P1Q2M238 152 aa9.57□□□□□ -0.88
SHROOM3-208ENST00000486758 ZFP36P26651 326 aaKnown RBP9.56□□□□□ -0.88
SHROOM3-208ENST00000486758 RNASE4P34096 147 aaKnown RBP9.56□□□□□ -0.88
SHROOM3-208ENST00000486758 H7C1H1 209 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 TTC32Q5I0X7 151 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 PIP4P2Q8N4L2 257 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 TRBV20-1A0A075B6N2 111 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 LINC01548A6NM66 108 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 A8MWV9 139 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 ZFP2Q6ZN57 461 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 Q6ZQT7 251 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 TEX29Q8N6K0 151 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 SMPXQ9UHP9 88 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 MYMXA0A1B0GTQ4 84 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 LGALS3P17931 250 aaKnown RBP9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 Q8N8P6 123 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 MRAP2Q96G30 205 aa9.55□□□□□ -0.88
SHROOM3-208ENST00000486758 C9JAW5 83 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 MT-ATP8P03928 68 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 PLNP26678 52 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 RPL39LQ96EH5 51 aaKnown RBP9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 SNCGO76070 127 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 ADORA2A-AS1P86434 159 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 DPF1Q92782 380 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 EEF1AKMT3Q96AZ1 226 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 B5MCH6 92 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 C2orf66Q6UXQ4 117 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 LINC00574Q9H8X3 128 aa9.54□□□□□ -0.88
SHROOM3-208ENST00000486758 COX6B1P14854 86 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 A0A087WWL8 130 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 F8VRH5 84 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 PRSS29PA6NIE9 313 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 PDE6HQ13956 83 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 ZNF493Q6ZR52 646 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 OR10J6PQ8NGY7 276 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 AGPAT4-IT1Q9H0P7 198 aa9.53□□□□□ -0.88
SHROOM3-208ENST00000486758 WI2-2373I1.2A0A1W2PRP0 233 aa9.52□□□□□ -0.88
SHROOM3-208ENST00000486758 A0A087WX48 190 aa9.52□□□□□ -0.89
SHROOM3-208ENST00000486758 H3BUX3 64 aa9.52□□□□□ -0.89
SHROOM3-208ENST00000486758 NRGNQ92686 78 aa9.52□□□□□ -0.89
SHROOM3-208ENST00000486758 C8orf86Q6ZUL3 223 aa9.52□□□□□ -0.89
SHROOM3-208ENST00000486758 KIR2DL4Q99706 377 aa9.52□□□□□ -0.89
SHROOM3-208ENST00000486758 A0A0U1RRA0 63 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 E9PLD3 99 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 F6UB75 175 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 ASIPP42127 132 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 ZNF56Q15929 161 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 FANCD2OSQ96PS1 177 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 HHLA3Q9XRX5 114 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 COL27A1Q8IZC6 1860 aaPredicted RBP9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 INS-IGF2F8WCM5 200 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 SUMO2P61956 95 aaKnown RBP9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 FOXI1Q12951 378 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 ORMDL2Q53FV1 153 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 ZFAND6Q6FIF0 208 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 C3orf56Q8N813 242 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 CCL19Q99731 98 aa9.51□□□□□ -0.89
SHROOM3-208ENST00000486758 IGKV3D-20A0A0C4DH25 116 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 ADARB2-AS1A8MUL3 147 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 CTSGP08311 255 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 IGF2-ASQ6U949 168 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 ANKRD17O75179 2603 aaKnown RBP9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 UTP20O75691 2785 aaKnown RBP9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 IGHV7-81A0A0B4J1V7 117 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 RNF185Q96GF1 192 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 SMIM2Q9BVW6 85 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 NPFFO15130 113 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 PAX8Q06710 450 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 RNF183Q96D59 192 aa9.5□□□□□ -0.89
SHROOM3-208ENST00000486758 GAGE2BQ13066 116 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 GAGE2EQ4V326 116 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 PLEKHB2Q96CS7 222 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 GAGE2DQ9UEU5 116 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 TP53TG1Q9Y2A0 90 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 TRAV41A0A0B4J266 112 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 M0R1W7 72 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 C11orf44Q8N8P7 122 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 HIGD1BQ9P298 99 aa9.49□□□□□ -0.89
SHROOM3-208ENST00000486758 HOXB4P17483 251 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms