RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ARPP19P56211 112 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 TPPP2P59282 170 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 TMEM258P61165 79 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 EIF5AP63241 154 aaKnown RBP1.67□□□□□ -2.14
VPS41-213ENST00000485955 HBBP68871 147 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 QRFPP83859 136 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 HSD52Q0P140 79 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 MEIG1Q5JSS6 88 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 FAM104BQ5XKR9 115 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 C22orf39Q6P5X5 142 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 AMTNQ6UX39 209 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 PHF5AQ7RTV0 110 aaKnown RBP1.67□□□□□ -2.14
VPS41-213ENST00000485955 SPATA12Q7Z6I5 190 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 RPS19BP1Q86WX3 136 aaKnown RBP1.67□□□□□ -2.14
VPS41-213ENST00000485955 OR8D4Q8NGM9 314 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 WFDC5Q8TCV5 224 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 YPEL2Q96QA6 119 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 SDF2Q99470 211 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 SNRNP25Q9BV90 132 aaKnown RBP1.67□□□□□ -2.14
VPS41-213ENST00000485955 MRPL32Q9BYC8 188 aaKnown RBP1.67□□□□□ -2.14
VPS41-213ENST00000485955 RERGLQ9H628 205 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 XAGE1AQ9HD64 81 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 FAM60AQ9NP50 221 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 SLC39A9Q9NUM3 307 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 C21orf62Q9NYP8 219 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 METTL1Q9UBP6 276 aaKnown RBP1.67□□□□□ -2.14
VPS41-213ENST00000485955 LINC00588Q9Y4M8 146 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 PI4KAP42356 2102 aa1.67□□□□□ -2.14
VPS41-213ENST00000485955 HERC1Q15751 4861 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 MYLKQ15746 1914 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 DENND4CQ5VZ89 1909 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 DLG5Q8TDM6 1919 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 TRBV27A0A0K0K1C4 114 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 ZNF727A8MUV8 499 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 A8MWV9 139 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 LEUTXA8MZ59 168 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 H3BMG7 143 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 CCDC179H3BU77 68 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 LEPROTO15243 131 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 HIST1H2BKO60814 126 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 SOD1P00441 154 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 KRASP01116 189 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 C1QAP02745 245 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 TCRAP04437 139 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 HIST1H2BJP06899 126 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 CD28P10747 220 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 CRHBPP24387 322 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 RNASE4P34096 147 aaKnown RBP1.66□□□□□ -2.14
VPS41-213ENST00000485955 ZNF93P35789 620 aaPredicted RBP1.66□□□□□ -2.14
VPS41-213ENST00000485955 TGFBR1P36897 503 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 FOXA3P55318 350 aaPredicted RBP1.66□□□□□ -2.14
VPS41-213ENST00000485955 S100A10P60903 97 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 BTG2P78543 158 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 MIR17HGQ75NE6 70 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 GKN2Q86XP6 184 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 ZNF101Q8IZC7 436 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 HIST3H2BBQ8N257 126 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 ZFAND2AQ8N6M9 145 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 MORN4Q8NDC4 146 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 WFDC11Q8NEX6 87 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 CIRBP-AS1Q8TBR5 109 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 CIB3Q96Q77 187 aaPredicted RBP1.66□□□□□ -2.14
VPS41-213ENST00000485955 HIST1H2BLQ99880 126 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 MIEN1Q9BRT3 115 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 UPK3BQ9BT76 320 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 GABARAPL1Q9H0R8 117 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 DUSP21Q9H596 190 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 C11orf1Q9H5F2 150 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 ZNF586Q9NXT0 402 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 SCP2D1Q9UJQ7 156 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 MPC1Q9Y5U8 109 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 V9GYS6 101 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 ZANQ9Y493 2812 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 KIAA1549LQ6ZVL6 1849 aa1.66□□□□□ -2.14
VPS41-213ENST00000485955 IGHV1-3A0A0C4DH29 117 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 A8MWP4 228 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 MPC2O95563 127 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 TNFP01375 233 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 IGKV1D-33P01593 117 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 IGKV1-33P01594 117 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 IGHV3-7P01780 117 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 IGKV1-16P04430 117 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 IGHV3-30-3P0DP02 117 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 CCL3P10147 92 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 HLA-DRB4P13762 266 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 HLA-DMBP28068 263 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 BRS3P32247 399 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 TSPEAR-AS2P59090 65 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 SNRPD3P62318 126 aaKnown RBP1.65□□□□□ -2.15
VPS41-213ENST00000485955 RPL18Q07020 188 aaKnown RBP1.65□□□□□ -2.15
VPS41-213ENST00000485955 TMEM155Q4W5P6 130 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 PABPC1L2AQ5JQF8 200 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 IZUMO2Q6UXV1 221 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 C7orf65Q6ZTY9 151 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 ZNF767PQ75MW2 155 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 AAED1Q7RTV5 226 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 SIGLECL1Q8N7X8 197 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 C5orf17Q8NAS9 161 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 OR10P1Q8NGE3 313 aa1.65□□□□□ -2.15
VPS41-213ENST00000485955 OR5D16Q8NGK9 328 aa1.65□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms