RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 C9orf62Q8N4C0 152 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 LYPD6BQ8NI32 183 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 CMTM2Q8TAZ6 248 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 LINC00479Q96M42 142 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 C9orf85Q96MD7 179 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 SPXQ9BT56 116 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 MAP1LC3BQ9GZQ8 125 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 TREM1Q9NP99 234 aa3.96□□□□□ -1.78
CUX1-208ENST00000485792 IGKV3D-20A0A0C4DH25 116 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 A0A1B0GVY2 172 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 KANTRA0A1W2PQU2 76 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 PEX7O00628 323 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 GNRH2O43555 120 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 TYMSP04818 313 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 RNASE3P12724 160 aaKnown RBP3.95□□□□□ -1.78
CUX1-208ENST00000485792 HTN1P15515 57 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 RAB5CP51148 216 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 EIF5AP63241 154 aaKnown RBP3.95□□□□□ -1.78
CUX1-208ENST00000485792 CCL20P78556 96 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 ZNF674Q2M3X9 581 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 SLC51BQ86UW2 128 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 ZNRF2Q8NHG8 242 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 C11orf52Q96A22 123 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 KCNS1Q96KK3 526 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 UPK3BQ9BT76 320 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 ZNF471Q9BX82 626 aaPredicted RBP3.95□□□□□ -1.78
CUX1-208ENST00000485792 ZFP30Q9Y2G7 519 aa3.95□□□□□ -1.78
CUX1-208ENST00000485792 TRGV11A0A075B6L2 103 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 A0A096LPF7 62 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 GAGE12BA1L429 117 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 GAGE12HA6NDE8 117 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 K7EQM0 130 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 RTL8CO15255 209 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 GCGP01275 180 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 TPT1P13693 172 aaKnown RBP3.94□□□□□ -1.78
CUX1-208ENST00000485792 ZNF415Q09FC8 603 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 SMUG1Q53HV7 270 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 UFSP1Q6NVU6 142 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 FAM159AQ6UWV7 190 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 Q86TA4 180 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 TMEM183AQ8IXX5 376 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 SFT2D1Q8WV19 159 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 ZC2HC1AQ96GY0 325 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 FMC1Q96HJ9 113 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 TXNDC17Q9BRA2 123 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 C1orf43Q9BWL3 253 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 SCRT2Q9NQ03 307 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 Q9UF83 564 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 LINC00588Q9Y4M8 146 aa3.94□□□□□ -1.78
CUX1-208ENST00000485792 FAT1Q14517 4588 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 TRAV26-1A0A087WT03 109 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 TRGV1A0A0A0MS02 117 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 TRAV4A0A0B4J268 109 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 TRAV34A0A0B4J273 112 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 FABP5P3A8MUU1 101 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 KRBOX1C9JBD0 128 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 F5H768 121 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 M0R2P5 195 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 CIDEAO60543 219 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 PAGE4O60829 102 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 NDUFS6O75380 124 aaKnown RBP3.93□□□□□ -1.78
CUX1-208ENST00000485792 GAGE7O76087 117 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 S100A9P06702 114 aaKnown RBP3.93□□□□□ -1.78
CUX1-208ENST00000485792 GAGE12FP0CL80 117 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 GAGE12GP0CL81 117 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 GAGE12IP0CL82 117 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 PPT1P50897 306 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 NKX2-5P52952 324 aaPredicted RBP3.93□□□□□ -1.78
CUX1-208ENST00000485792 CRYBA4P53673 196 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 UBE2G2P60604 165 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 SLAQ13239 276 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 ESRGQ1W209 222 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 MUC21Q5SSG8 566 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 AKAP14Q86UN6 197 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 FAM213BQ8TBF2 198 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 ZNF479Q96JC4 524 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 MRPL16Q9NX20 251 aaKnown RBP3.93□□□□□ -1.78
CUX1-208ENST00000485792 IL36BQ9NZH7 164 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 PRO0255Q9UI72 69 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 RPH3ALQ9UNE2 315 aa3.93□□□□□ -1.78
CUX1-208ENST00000485792 TRBV20OR9-2A0A075B6H5 130 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 LOC100131303A0A0U1RQF7 123 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 PRSS29PA6NIE9 313 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 RS1O15537 224 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 IGLV2-8P01709 118 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 CXCL1P09341 107 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 GATA1P15976 413 aaPredicted RBP3.92□□□□□ -1.78
CUX1-208ENST00000485792 BTF3P20290 206 aaKnown RBP3.92□□□□□ -1.78
CUX1-208ENST00000485792 TIRAPP58753 221 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 CFAP126Q5VTH2 177 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 EIF5AL1Q6IS14 154 aaKnown RBP3.92□□□□□ -1.78
CUX1-208ENST00000485792 CFAP161Q6P656 301 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 PRNTQ86SH4 94 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 NDFIP1Q9BT67 221 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 DERL1Q9BUN8 251 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 KRTAP4-5Q9BYR2 181 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 SDF2L1Q9HCN8 221 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 MANBALQ9NQG1 85 aa3.92□□□□□ -1.78
CUX1-208ENST00000485792 TRGV2A0A075B6R0 118 aa3.91□□□□□ -1.78
CUX1-208ENST00000485792 A0A1B0GV50 99 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms