RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 MED14OSP0DP75 135 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 CRIP1P50238 77 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 DNLZQ5SXM8 178 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 Q6ZTI0 123 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 LINC00612Q8N6U2 182 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 C15orf54Q8N8G6 183 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 C15orf53Q8NAA6 179 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 OR4C5Q8NGB2 326 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 OR2D3Q8NGH3 330 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 OCC1Q8TAD7 63 aa5.88□□□□□ -1.47
SF3A1-208ENST00000485618 IGKV3D-20A0A0C4DH25 116 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 TRGV4A0A0C4DH28 118 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 A8MWL6 223 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 ARMS2P0C7Q2 107 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 ERVFC1-1P60608 527 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 UQCC3Q6UW78 93 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 Q6ZQT7 251 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 ZFP82Q8N141 532 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 PCNPQ8WW12 178 aaKnown RBP5.87□□□□□ -1.47
SF3A1-208ENST00000485618 BORCS7Q96B45 105 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 MRPL16Q9NX20 251 aaKnown RBP5.87□□□□□ -1.47
SF3A1-208ENST00000485618 C11orf21Q9P2W6 132 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 NAT8Q9UHE5 227 aa5.87□□□□□ -1.47
SF3A1-208ENST00000485618 TMSB15BA0A087X1C1 80 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 TRAV4A0A0B4J268 109 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 GRIFINA4D1Z8 144 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 H3BNG1 76 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 H3BVH4 76 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 RHODO00212 210 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 GATCO43716 136 aaKnown RBP5.86□□□□□ -1.47
SF3A1-208ENST00000485618 CACNG7P62955 275 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 SPANXN1Q5VSR9 72 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 SH2D6Q7Z4S9 175 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 C9orf85Q96MD7 179 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 RPP21Q9H633 154 aaKnown RBP5.86□□□□□ -1.47
SF3A1-208ENST00000485618 PRO0255Q9UI72 69 aa5.86□□□□□ -1.47
SF3A1-208ENST00000485618 TRBV20OR9-2A0A075B6H5 130 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 IGHV4-4A0A075B6R2 117 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 C19orf71A6NCJ1 209 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 PAX4O43316 350 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 IGLV2-8P01709 118 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 OR5AL1P0C617 328 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 SMIM17P0DL12 118 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 PNRC1Q12796 327 aaPredicted RBP5.85□□□□□ -1.47
SF3A1-208ENST00000485618 WDR73Q6P4I2 378 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 ZFP2Q6ZN57 461 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 FAM231DQ6ZW35 169 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 SMIM15Q7Z3B0 74 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 LINC01551Q86U37 167 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 FER1L6-AS1Q8NA97 138 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 NUDT10Q8NFP7 164 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 NUDT11Q96G61 164 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 TPPP3Q9BW30 176 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 HHLA3Q9XRX5 114 aa5.85□□□□□ -1.47
SF3A1-208ENST00000485618 FAM231BA6NCW3 169 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 PGPEP1LA6NFU8 196 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 M0R381 172 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 PPP1R2P9O14990 202 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 P0DMU3 169 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 FAM231AP0DMU4 169 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 FAM231CP0DMU5 169 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 RNASE3P12724 160 aaKnown RBP5.84□□□□□ -1.47
SF3A1-208ENST00000485618 IFITM2Q01629 132 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 ADIRFQ15847 76 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 CT83Q5H943 113 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 TMEM88Q6PEY1 159 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 PRADC1Q9BSG0 188 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 SCRT2Q9NQ03 307 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 OSTCQ9NRP0 149 aa5.84□□□□□ -1.47
SF3A1-208ENST00000485618 TRAV26-1A0A087WT03 109 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 RS1O15537 224 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 NUDT3O95989 172 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 IGHV3-53P01767 116 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 MT-ND4LP03901 98 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 SFTA3P0C7M3 94 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 CCL18P55774 89 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 MRPL23Q16540 153 aaKnown RBP5.83□□□□□ -1.48
SF3A1-208ENST00000485618 DMRTA1Q5VZB9 504 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.83□□□□□ -1.48
SF3A1-208ENST00000485618 OR10G8Q8NGN5 311 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 SFRP2Q96HF1 295 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 SSBP4Q9BWG4 385 aaPredicted RBP5.83□□□□□ -1.48
SF3A1-208ENST00000485618 GFRA4Q9GZZ7 299 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 RNASE7Q9H1E1 156 aaKnown RBP5.83□□□□□ -1.48
SF3A1-208ENST00000485618 MUC4Q99102 2169 aa5.83□□□□□ -1.48
SF3A1-208ENST00000485618 TRBV6-4A0A1B0GX49 114 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 C9JQL5 133 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 K7EN84 100 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 SNAI2O43623 268 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 TRGC1P0CF51 173 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 FAM3BP58499 235 aaPredicted RBP5.82□□□□□ -1.48
SF3A1-208ENST00000485618 RPL19P84098 196 aaKnown RBP5.82□□□□□ -1.48
SF3A1-208ENST00000485618 SRSF3P84103 164 aaKnown RBP5.82□□□□□ -1.48
SF3A1-208ENST00000485618 CFAP126Q5VTH2 177 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 COMMD7Q86VX2 200 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 UBE2DNLQ8IWF7 75 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 AP1S3Q96PC3 154 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 ICOSQ9Y6W8 199 aa5.82□□□□□ -1.48
SF3A1-208ENST00000485618 CSMD3Q7Z407 3707 aa5.81□□□□□ -1.48
SF3A1-208ENST00000485618 A0A0J9YY99 117 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms