RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 FAM104BQ5XKR9 115 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 Q6ZUT4 128 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 LINC00305Q7Z4B0 112 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 AMN1Q8IY45 258 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 OR13C6PQ8NH95 151 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 TMEM158Q8WZ71 300 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 PGLYRP4Q96LB8 373 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 RAB1BQ9H0U4 201 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 TMEM133Q9H2Q1 129 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 NHP2Q9NX24 153 aaKnown RBP3.68□□□□□ -1.82
USP40-213ENST00000483216 HIGD1AQ9Y241 93 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 U3KQA8 63 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 RIF1Q5UIP0 2472 aaKnown RBP3.68□□□□□ -1.82
USP40-213ENST00000483216 CFAP54Q96N23 3096 aa3.68□□□□□ -1.82
USP40-213ENST00000483216 TRBV25-1A0A075B6N4 114 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 MYMXA0A1B0GTQ4 84 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 FABP5P3A8MUU1 101 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 H7C1H1 209 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 K7EM74 188 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 NPYP01303 97 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 INSP01308 110 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 LGALS1P09382 135 aaKnown RBP3.67□□□□□ -1.82
USP40-213ENST00000483216 COX7A1P24310 79 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 HLA-DMBP28068 263 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 MYCNOSP40205 109 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 CACNG7P62955 275 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 ACP7Q6ZNF0 438 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 C16orf47Q6ZP98 133 aaPredicted RBP3.67□□□□□ -1.82
USP40-213ENST00000483216 C8orf31Q8N9H6 132 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 FLYWCH2Q96CP2 140 aaKnown RBP3.67□□□□□ -1.82
USP40-213ENST00000483216 HINT2Q9BX68 163 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 UFC1Q9Y3C8 167 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 ZNF292O60281 2723 aa3.67□□□□□ -1.82
USP40-213ENST00000483216 CHD3Q12873 2000 aaKnown RBP3.66□□□□□ -1.82
USP40-213ENST00000483216 FAM186AA6NE01 2351 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 MYO15AQ9UKN7 3530 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 IGHV1-45A0A0A0MS14 117 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 TRAV5A0A0B4J249 113 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 CXCL13O43927 109 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 MOSP00540 346 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 RPS28P62857 69 aaKnown RBP3.66□□□□□ -1.82
USP40-213ENST00000483216 ATXN8Q156A1 80 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 CFAP126Q5VTH2 177 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 Q86TA4 180 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 KIR3DL3Q8N743 410 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 CT55Q8WUE5 264 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 FXYD5Q96DB9 178 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 FAM167A-AS1Q96KT0 104 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 RNF5Q99942 180 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 TPPP3Q9BW30 176 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 FBXL15Q9H469 300 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 TP73-AS1Q9UF72 201 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 PSG8Q9UQ74 426 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 INSIG2Q9Y5U4 225 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 LINC00312Q9Y6C7 94 aa3.66□□□□□ -1.82
USP40-213ENST00000483216 EP300Q09472 2414 aaPredicted RBP3.65□□□□□ -1.82
USP40-213ENST00000483216 DMDP11532 3685 aa3.65□□□□□ -1.82
USP40-213ENST00000483216 LAMA1P25391 3075 aa3.65□□□□□ -1.82
USP40-213ENST00000483216 OBSCNQ5VST9 7968 aa3.65□□□□□ -1.82
USP40-213ENST00000483216 A0A087WX48 190 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 A0A1B0GX51 115 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 TIMM8AO60220 97 aaPredicted RBP3.65□□□□□ -1.83
USP40-213ENST00000483216 WFDC2Q14508 124 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 SCGB1D4Q6XE38 83 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 KRTAP5-5Q701N2 237 aaPredicted RBP3.65□□□□□ -1.83
USP40-213ENST00000483216 LRRC75A-AS1Q8N1F1 130 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 Q8N8P6 123 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 NKAPP1Q8N9T2 125 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 TMEM167AQ8TBQ9 72 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 CHCHD10Q8WYQ3 142 aaPredicted RBP3.65□□□□□ -1.83
USP40-213ENST00000483216 LINC01600Q96MT4 127 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 KRTAP4-3Q9BYR4 195 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 LINC00574Q9H8X3 128 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 NDUFA4L2Q9NRX3 87 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 CALYQ9NYX4 217 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 HILPDAQ9Y5L2 63 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 ARHGAP21Q5T5U3 1957 aa3.65□□□□□ -1.83
USP40-213ENST00000483216 TNRC6AQ8NDV7 1962 aaKnown RBP3.64□□□□□ -1.83
USP40-213ENST00000483216 IGHV3-15A0A0B4J1V0 119 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 LOC107984156A0A0G2JMH3 177 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 C5orf63A6NC05 138 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 D6R8Y8 96 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 F8VRH5 84 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 C15orf65H3BRN8 121 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 J3KT08 172 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 RNASE2P10153 161 aaKnown RBP3.64□□□□□ -1.83
USP40-213ENST00000483216 COX6A1P12074 109 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 RPL7P18124 248 aaKnown RBP3.64□□□□□ -1.83
USP40-213ENST00000483216 IFI27P40305 119 aaPredicted RBP3.64□□□□□ -1.83
USP40-213ENST00000483216 ZNF137PP52743 207 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 GDF5OSQ5U4N7 250 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 SBSPONQ8IVN8 264 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 ARL17AQ8IVW1 177 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 PTH2Q96A98 100 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 DNAJC30Q96LL9 226 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 RASL11BQ9BPW5 248 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 C20orf78Q9BR46 151 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 CNFNQ9BYD5 112 aa3.64□□□□□ -1.83
USP40-213ENST00000483216 KLF13Q9Y2Y9 288 aaPredicted RBP3.64□□□□□ -1.83
USP40-213ENST00000483216 TIMM8BQ9Y5J9 83 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms