RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MAPKAPK5-AS1Q8N8E1 139 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 PHLDA1Q8WV24 401 aaPredicted RBP10.53□□□□□ -0.72
USP42-206ENST00000479544 DUX3Q96PT4 197 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 C1QTNF4Q9BXJ3 329 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 ZFP2Q6ZN57 461 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 FLNBO75369 2602 aaKnown RBP10.53□□□□□ -0.72
USP42-206ENST00000479544 TRAV41A0A0B4J266 112 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 OVOL3O00110 214 aa10.53□□□□□ -0.72
USP42-206ENST00000479544 DUSP14O95147 198 aaKnown RBP10.53□□□□□ -0.72
USP42-206ENST00000479544 SEM1Q6ZVN7 128 aa10.52□□□□□ -0.73
USP42-206ENST00000479544 ZNF292O60281 2723 aa10.52□□□□□ -0.73
USP42-206ENST00000479544 RNF5Q99942 180 aa10.52□□□□□ -0.73
USP42-206ENST00000479544 TET2Q6N021 2002 aaPredicted RBP10.52□□□□□ -0.73
USP42-206ENST00000479544 CPAMD8Q8IZJ3 1885 aa10.52□□□□□ -0.73
USP42-206ENST00000479544 MT-ATP8P03928 68 aa10.52□□□□□ -0.73
USP42-206ENST00000479544 SAA4P35542 130 aa10.52□□□□□ -0.73
USP42-206ENST00000479544 TEX22C9J3V5 150 aa10.51□□□□□ -0.73
USP42-206ENST00000479544 FOXI1Q12951 378 aa10.51□□□□□ -0.73
USP42-206ENST00000479544 ZNF48Q96MX3 618 aaPredicted RBP10.51□□□□□ -0.73
USP42-206ENST00000479544 RHPN1-AS1Q9BWJ2 59 aa10.51□□□□□ -0.73
USP42-206ENST00000479544 KLK9Q9UKQ9 250 aa10.51□□□□□ -0.73
USP42-206ENST00000479544 DSPP15924 2871 aaKnown RBP10.51□□□□□ -0.73
USP42-206ENST00000479544 RPL39P62891 51 aaKnown RBP10.51□□□□□ -0.73
USP42-206ENST00000479544 ABCA12Q86UK0 2595 aa10.51□□□□□ -0.73
USP42-206ENST00000479544 MAP1AP78559 2803 aaPredicted RBP10.51□□□□□ -0.73
USP42-206ENST00000479544 ATXN8Q156A1 80 aa10.51□□□□□ -0.73
USP42-206ENST00000479544 TRBV7-9A0A0J9YWB2 115 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 J3QQQ9 107 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 PMVKQ15126 192 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 ITLN2Q8WWU7 325 aaPredicted RBP10.5□□□□□ -0.73
USP42-206ENST00000479544 FRYLO94915 3013 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 LY6DQ14210 128 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 C9orf139Q6ZV77 190 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 OVOL1O14753 267 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 THBDP07204 575 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 C15orf53Q8NAA6 179 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 C7orf69Q9H7B7 122 aa10.5□□□□□ -0.73
USP42-206ENST00000479544 POLQO75417 2590 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 CR1LQ2VPA4 569 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 RNF183Q96D59 192 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 LRP4O75096 1905 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 PRB1P04280 392 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 CTSGP08311 255 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 GRNP28799 593 aaKnown RBP10.49□□□□□ -0.73
USP42-206ENST00000479544 LINC01587Q99440 93 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 TIMM21Q9BVV7 248 aa10.49□□□□□ -0.73
USP42-206ENST00000479544 SPANXB1Q9NS25 103 aaPredicted RBP10.49□□□□□ -0.73
USP42-206ENST00000479544 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.48□□□□□ -0.73
USP42-206ENST00000479544 CRYGCP07315 174 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 TAL2Q16559 108 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 SPINK13Q1W4C9 94 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 C11orf44Q8N8P7 122 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 PRORYQ9H606 182 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 A4D1N5 150 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 UBE2L6O14933 153 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 TRAV13-1A0A0B4J241 112 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 ATP5J2P56134 94 aa10.48□□□□□ -0.73
USP42-206ENST00000479544 IGHV3-38A0A0C4DH36 116 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE12JA6NER3 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE7O76087 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE12FP0CL80 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE12GP0CL81 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE12IP0CL82 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE4Q13068 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE5Q13069 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 GAGE6Q13070 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 TRPT1Q86TN4 253 aaKnown RBP10.47□□□□□ -0.73
USP42-206ENST00000479544 DOPEY1Q5JWR5 2465 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 IGHV3-16A0A0C4DH30 117 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 H3BMM0 161 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 IGHV3-53P01767 116 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 ANKRD29Q8N6D5 301 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 UBE2WQ96B02 151 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 MYCNOSP40205 109 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 EDA2RQ9HAV5 297 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 HIGD1BQ9P298 99 aa10.47□□□□□ -0.73
USP42-206ENST00000479544 PRSS47A8MTI9 375 aa10.46□□□□□ -0.73
USP42-206ENST00000479544 H3BUX3 64 aa10.46□□□□□ -0.73
USP42-206ENST00000479544 IFITM1P13164 125 aa10.46□□□□□ -0.73
USP42-206ENST00000479544 JPT2Q9H910 190 aa10.46□□□□□ -0.73
USP42-206ENST00000479544 TEN1Q86WV5 123 aa10.46□□□□□ -0.74
USP42-206ENST00000479544 OPRPNQ99935 248 aaPredicted RBP10.46□□□□□ -0.74
USP42-206ENST00000479544 C11orf68Q9H3H3 251 aaKnown RBP10.46□□□□□ -0.74
USP42-206ENST00000479544 MTORP42345 2549 aa10.46□□□□□ -0.74
USP42-206ENST00000479544 CEP192Q8TEP8 1941 aa10.46□□□□□ -0.74
USP42-206ENST00000479544 SYNJ2BPP57105 145 aa10.46□□□□□ -0.74
USP42-206ENST00000479544 PLEKHB2Q96CS7 222 aa10.46□□□□□ -0.74
USP42-206ENST00000479544 RBAKDNA6NC62 111 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 K7ENP7 123 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 IGLV2-11P01706 119 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 LGALS1P09382 135 aaKnown RBP10.45□□□□□ -0.74
USP42-206ENST00000479544 C11orf86A6NJI1 115 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 E9PLD3 99 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 CFC1BP0CG36 223 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 CFC1P0CG37 223 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 BPESC1Q9GZL8 116 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 JMJD1CQ15652 2540 aa10.45□□□□□ -0.74
USP42-206ENST00000479544 GAGE2AQ6NT46 116 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 DAND5Q8N907 189 aa10.44□□□□□ -0.74
USP42-206ENST00000479544 A0A0J9YXV3 536 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms