RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 DNLZQ5SXM8 178 aa10.51□□□□□ -0.73
LIMS1-212ENST00000474038 OR4C5Q8NGB2 326 aa10.51□□□□□ -0.73
LIMS1-212ENST00000474038 LYPD6BQ8NI32 183 aa10.51□□□□□ -0.73
LIMS1-212ENST00000474038 PTH2Q96A98 100 aa10.51□□□□□ -0.73
LIMS1-212ENST00000474038 PRO0255Q9UI72 69 aa10.51□□□□□ -0.73
LIMS1-212ENST00000474038 HHLA3Q9XRX5 114 aa10.51□□□□□ -0.73
LIMS1-212ENST00000474038 TRGV4A0A0C4DH28 118 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 GRIFINA4D1Z8 144 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 PAX4O43316 350 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 TAGLN2P37802 199 aaKnown RBP10.5□□□□□ -0.73
LIMS1-212ENST00000474038 SLAQ13239 276 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 LINC01559Q495D7 138 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 ZNF506Q5JVG8 444 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 MED9Q9NWA0 146 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 IL36BQ9NZH7 164 aa10.5□□□□□ -0.73
LIMS1-212ENST00000474038 IGLV2-18A0A075B6J9 118 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 TMSB15BA0A087X1C1 80 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 A0A096LPF7 62 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 RAB19A4D1S5 217 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 IGLV2-8P01709 118 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 CENPWQ5EE01 88 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 LINC00588Q9Y4M8 146 aa10.49□□□□□ -0.73
LIMS1-212ENST00000474038 H3BVH4 76 aa10.48□□□□□ -0.73
LIMS1-212ENST00000474038 RS1O15537 224 aa10.48□□□□□ -0.73
LIMS1-212ENST00000474038 ARMS2P0C7Q2 107 aa10.48□□□□□ -0.73
LIMS1-212ENST00000474038 CCL18P55774 89 aa10.48□□□□□ -0.73
LIMS1-212ENST00000474038 FAM3BP58499 235 aaPredicted RBP10.48□□□□□ -0.73
LIMS1-212ENST00000474038 CFAP126Q5VTH2 177 aa10.48□□□□□ -0.73
LIMS1-212ENST00000474038 PRR27Q6MZM9 219 aa10.48□□□□□ -0.73
LIMS1-212ENST00000474038 TRBV20OR9-2A0A075B6H5 130 aa10.47□□□□□ -0.73
LIMS1-212ENST00000474038 RBFOX3A6NFN3 312 aa10.47□□□□□ -0.73
LIMS1-212ENST00000474038 GNG4P50150 75 aa10.47□□□□□ -0.73
LIMS1-212ENST00000474038 RPL19P84098 196 aaKnown RBP10.47□□□□□ -0.73
LIMS1-212ENST00000474038 ESRGQ1W209 222 aa10.47□□□□□ -0.73
LIMS1-212ENST00000474038 ICOSQ9Y6W8 199 aa10.47□□□□□ -0.73
LIMS1-212ENST00000474038 PIK3CD-AS1Q5SR53 167 aa10.46□□□□□ -0.73
LIMS1-212ENST00000474038 ZNRF2Q8NHG8 242 aa10.46□□□□□ -0.73
LIMS1-212ENST00000474038 SCRT2Q9NQ03 307 aa10.46□□□□□ -0.73
LIMS1-212ENST00000474038 RTL8CO15255 209 aa10.45□□□□□ -0.74
LIMS1-212ENST00000474038 MGST1P10620 155 aaKnown RBP10.45□□□□□ -0.74
LIMS1-212ENST00000474038 GATA1P15976 413 aaPredicted RBP10.45□□□□□ -0.74
LIMS1-212ENST00000474038 DMRTA1Q5VZB9 504 aa10.45□□□□□ -0.74
LIMS1-212ENST00000474038 LINC00336Q6ZUF6 198 aa10.45□□□□□ -0.74
LIMS1-212ENST00000474038 SMIM12Q96EX1 92 aa10.45□□□□□ -0.74
LIMS1-212ENST00000474038 IGHV3-73A0A0B4J1V6 119 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 K7EQD1 137 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 CIDEAO60543 219 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 CXCL1P09341 107 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 GYPEP15421 78 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 MRPL23Q16540 153 aaKnown RBP10.44□□□□□ -0.74
LIMS1-212ENST00000474038 TEX261Q6UWH6 196 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 Q6ZR54 194 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 JPT2Q9H910 190 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 PHLDA3Q9Y5J5 127 aa10.44□□□□□ -0.74
LIMS1-212ENST00000474038 PKHD1P08F94 4074 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 C19orf71A6NCJ1 209 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 A8MWV9 139 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 TMEM250H0YL14 139 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 MED14OSP0DP75 135 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 TOR2AQ5JU69 321 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 SYT8Q8NBV8 401 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 PARLQ9H300 379 aa10.43□□□□□ -0.74
LIMS1-212ENST00000474038 MRPS16Q9Y3D3 137 aaKnown RBP10.43□□□□□ -0.74
LIMS1-212ENST00000474038 HERC2O95714 4834 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 LOC100131303A0A0U1RQF7 123 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 A0A1B0GVY2 172 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 PRSS29PA6NIE9 313 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 ZFP2Q6ZN57 461 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 SLC25A29Q8N8R3 303 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 PCNPQ8WW12 178 aaKnown RBP10.42□□□□□ -0.74
LIMS1-212ENST00000474038 FAM210AQ96ND0 272 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 SAMD10Q9BYL1 202 aa10.42□□□□□ -0.74
LIMS1-212ENST00000474038 TRBV6-4A0A1B0GX49 114 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 M0R381 172 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 SRIP30626 198 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 UFSP1Q6NVU6 142 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 LYPD5Q6UWN5 251 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 Q6ZSN1 163 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 NEGR1Q7Z3B1 354 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 ZFP82Q8N141 532 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 DAZAP1Q96EP5 407 aaKnown RBP10.41□□□□□ -0.74
LIMS1-212ENST00000474038 UPK3BQ9BT76 320 aa10.41□□□□□ -0.74
LIMS1-212ENST00000474038 SSBP4Q9BWG4 385 aaPredicted RBP10.41□□□□□ -0.74
LIMS1-212ENST00000474038 EIF5A2Q9GZV4 153 aaKnown RBP10.41□□□□□ -0.74
LIMS1-212ENST00000474038 DYNC1H1Q14204 4646 aaKnown RBP10.41□□□□□ -0.74
LIMS1-212ENST00000474038 PKD1P98161 4303 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 SNAI2O43623 268 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 OR2D3Q8NGH3 330 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 OR10AG1Q8NH19 301 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 OCC1Q8TAD7 63 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 SFRP2Q96HF1 295 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 Q9H8V8 135 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 BIN3Q9NQY0 253 aa10.4□□□□□ -0.74
LIMS1-212ENST00000474038 DNAH11Q96DT5 4516 aa10.4□□□□□ -0.75
LIMS1-212ENST00000474038 NBDYA0A0U1RRE5 68 aa10.39□□□□□ -0.75
LIMS1-212ENST00000474038 K7EN84 100 aa10.39□□□□□ -0.75
LIMS1-212ENST00000474038 NDUFS6O75380 124 aaKnown RBP10.39□□□□□ -0.75
LIMS1-212ENST00000474038 NXPH4O95158 308 aa10.39□□□□□ -0.75
LIMS1-212ENST00000474038 OR5AL1P0C617 328 aa10.39□□□□□ -0.75
LIMS1-212ENST00000474038 GZMBP10144 247 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms