RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 CASQ1P31415 396 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 UBE2D3P61077 147 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 DCDP81605 110 aaKnown RBP-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 RPL19P84098 196 aaKnown RBP-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 PLGLB1Q02325 96 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 KLKP1Q107X0 134 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 RSU1Q15404 277 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 GRK1Q15835 563 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 BATFQ16520 125 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 KHDC3LQ587J8 217 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 SPANXN3Q5MJ09 141 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 AADACL4Q5VUY2 407 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 RPL22L1Q6P5R6 122 aaKnown RBP-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 COMMD7Q86VX2 200 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 CLVS1Q8IUQ0 354 aaPredicted RBP-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 IQCF2Q8IXL9 164 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 CLECL1Q8IZS7 167 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 OR4B1Q8NGF8 309 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 MCFD2Q8NI22 146 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 PIGXQ8TBF5 258 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 RAB8BQ92930 207 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 TSLPQ969D9 159 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 DIRAS2Q96HU8 199 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 KCTD7Q96MP8 289 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 TREM1Q9NP99 234 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 LY96Q9Y6Y9 160 aa-0.22□□□□□ -2.44
UBXN4-207ENST00000471246 GCC2Q8IWJ2 1684 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 LOC107984156A0A0G2JMH3 177 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 PQLC2LA1A4F0 135 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 FABP12A6NFH5 140 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 EVPLLA8MZ36 301 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 F5H768 121 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 H3BNG1 76 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 H7BYZ3 331 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 M0QZK8 103 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 NDUFS6O75380 124 aaKnown RBP-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 MT-ND6P03923 174 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 TYMSP04818 313 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 CBLN1P23435 193 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BOP23527 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 PSMB6P28072 239 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BBP33778 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 ZNF137PP52743 207 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BDP58876 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 MAXP61244 160 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BCP62807 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 BLCAPP62952 87 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST2H2BEQ16778 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 RTL8BQ17RB0 113 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST2H2BFQ5QNW6 126 aaPredicted RBP-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 FAM74A1Q5RGS3 127 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 LINC00575Q6W349 94 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 MIR17HGQ75NE6 70 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 Q86TA4 180 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 FUNDC1Q8IVP5 155 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 ARL17AQ8IVW1 177 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 CNPY4Q8N129 248 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 OR10J5Q8NHC4 309 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 TERB2Q8NHR7 220 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 DNAJC9Q8WXX5 260 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BHQ93079 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 ITFG2Q969R8 447 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 ARL5BQ96KC2 179 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 CARD19Q96LW7 228 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BNQ99877 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 HIST1H2BMQ99879 126 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 COMMD5Q9GZQ3 224 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 WDR61Q9GZS3 305 aaKnown RBP-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 TCEAL2Q9H3H9 227 aaPredicted RBP-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 MAP1LC3AQ9H492 121 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 PSTPIP2Q9H939 334 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 UCK1Q9HA47 277 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 CACYBPQ9HB71 228 aaKnown RBP-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 LINC00474Q9P2X8 69 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 JPT1Q9UK76 154 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 TRAPPC2LQ9UL33 140 aa-0.23□□□□□ -2.45
UBXN4-207ENST00000471246 UQCRHLA0A096LP55 91 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 TRBV6-4A0A1B0GX49 114 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 C9orf92A6NGG3 77 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 SMIM9A6NGZ8 99 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 TRPC5OSA6NMA1 111 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 E7EQ34 232 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 NPFFO15130 113 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 PFDN6O15212 129 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 SSNA1O43805 119 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 NUPR1O60356 82 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 NIPSNAP2O75323 286 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 OR2B3O76000 313 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 PROSCO94903 275 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 IFNA1P01562 189 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 IGKV1-5P01602 117 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 HTN3P15516 51 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 HMGA1P17096 107 aaKnown RBP-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 RPL12P30050 165 aaKnown RBP-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 CAPZBP47756 277 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 DYNLT3P51808 116 aa-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 YPEL3P61236 119 aaPredicted RBP-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 EIF5AP63241 154 aaKnown RBP-0.24□□□□□ -2.45
UBXN4-207ENST00000471246 HBA1P69905 142 aa-0.24□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms