RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 TXNDC17Q9BRA2 123 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 NDUFAF3Q9BU61 184 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 MSRB1Q9NZV6 116 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 A8MTW9 85 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 PPP1R2P9O14990 202 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BKO60814 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BJP06899 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 CT45A10P0DMU9 189 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HLA-DRB4P13762 266 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF25P17030 456 aaPredicted RBP3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BOP23527 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BBP33778 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 CSN1S1P47710 185 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BDP58876 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 ERVFC1-1P60608 527 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BCP62807 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H1AQ02539 215 aaPredicted RBP3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST2H2BEQ16778 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.46□□□□□ -1.86
SF3B1-208ENST00000470268 FOXI2Q6ZQN5 318 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 Q6ZQT7 251 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 C9orf47Q6ZRZ4 202 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 GTSCR1Q86UQ5 136 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BHQ93079 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 RNF183Q96D59 192 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 IMMP2LQ96T52 175 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BNQ99877 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HIST1H2BMQ99879 126 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF492Q9P255 531 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 GOLT1BQ9Y3E0 138 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 KLF12Q9Y4X4 402 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 HLA-DRB4X5D2U9 266 aa3.46□□□□□ -1.86
SF3B1-208ENST00000470268 RBAKDNA6NC62 111 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 USP17L23D6RBM5 183 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 F8WDY8 70 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 GIG44P09565 113 aaPredicted RBP3.45□□□□□ -1.86
SF3B1-208ENST00000470268 TRGC1P0CF51 173 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM183BQ1AE95 376 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 PRR9Q5T870 116 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 Q86TA4 180 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 TRPT1Q86TN4 253 aaKnown RBP3.45□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM75Q8N9X5 138 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 OR4B1Q8NGF8 309 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 OR10G8Q8NGN5 311 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 PRSS3P2Q8NHM4 247 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 FAM19A4Q96LR4 140 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM242Q9NWH2 141 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 PSG8Q9UQ74 426 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 V9GYV3 84 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 SORL1Q92673 2214 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 MGAM2Q2M2H8 2515 aa3.45□□□□□ -1.86
SF3B1-208ENST00000470268 TRBV24-1A0A075B6N3 115 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 C9JCJ5 164 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 M0R2Z0 102 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 CRXO43186 299 aaPredicted RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 LTAP01374 205 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 IGHV4-30-4P0DP06 118 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 GZMBP10144 247 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 FABP4P15090 132 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 RPL35AP18077 110 aaKnown RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF80P51504 273 aaPredicted RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF138P52744 262 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 FXYD7P58549 80 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 SPINK13Q1W4C9 94 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 EBLN2Q6P2I7 272 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 PRNTQ86SH4 94 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 BAGE2Q86Y30 109 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 STHQ8IWL8 128 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 ZFAND2AQ8N6M9 145 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 OR10J6PQ8NGY7 276 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 NTN5Q8WTR8 489 aaPredicted RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 PYGO2Q9BRQ0 406 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 SRD5A3Q9H8P0 318 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 NAGKQ9UJ70 344 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 TRAV12-2A0A075B6T6 113 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM238C9JI98 176 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 K7EIL1 84 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 DLEU1O43261 78 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 GCGP01275 180 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 RBMY1A1P0DJD3 496 aaKnown RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 RBMY1CP0DJD4 496 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 CRIP1P50238 77 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 CMC4P56277 68 aaPredicted RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 UBE2G1P62253 170 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 RPL19P84098 196 aaKnown RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 JOSD1Q15040 202 aaPredicted RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 RBMY1FQ15415 496 aaKnown RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM78Q5T7P6 136 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 MRPL54Q6P161 138 aaKnown RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF664Q8N3J9 261 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 FMC1Q96HJ9 113 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 LINC00477Q96M19 166 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 PACRGQ96M98 296 aaPredicted RBP3.44□□□□□ -1.86
SF3B1-208ENST00000470268 TMEM208Q9BTX3 173 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 SNHG12Q9BXW3 62 aa3.44□□□□□ -1.86
SF3B1-208ENST00000470268 AGRNO00468 2067 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 TRBV6-1A0A0K0K1D8 114 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 GRIFINA4D1Z8 144 aa3.43□□□□□ -1.86
SF3B1-208ENST00000470268 ZNF705GA8MUZ8 300 aaPredicted RBP3.43□□□□□ -1.86
SF3B1-208ENST00000470268 KLLNB2CW77 178 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms