RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 C18orf15Q96N68 181 aa12.44□□□□□ -0.42
COL7A1-205ENST00000465238 TMSB15BA0A087X1C1 80 aa12.43□□□□□ -0.42
COL7A1-205ENST00000465238 A0A1B0GVY2 172 aa12.43□□□□□ -0.42
COL7A1-205ENST00000465238 M0R2N4 97 aa12.43□□□□□ -0.42
COL7A1-205ENST00000465238 NDUFS6O75380 124 aaKnown RBP12.43□□□□□ -0.42
COL7A1-205ENST00000465238 IGLV2-8P01709 118 aa12.43□□□□□ -0.42
COL7A1-205ENST00000465238 DAZAP1Q96EP5 407 aaKnown RBP12.43□□□□□ -0.42
COL7A1-205ENST00000465238 PARLQ9H300 379 aa12.43□□□□□ -0.42
COL7A1-205ENST00000465238 BIN3Q9NQY0 253 aa12.43□□□□□ -0.42
COL7A1-205ENST00000465238 MUC4Q99102 2169 aa12.42□□□□□ -0.42
COL7A1-205ENST00000465238 GRIFINA4D1Z8 144 aa12.42□□□□□ -0.42
COL7A1-205ENST00000465238 PRSS29PA6NIE9 313 aa12.42□□□□□ -0.42
COL7A1-205ENST00000465238 TMEM88Q6PEY1 159 aa12.42□□□□□ -0.42
COL7A1-205ENST00000465238 C9orf85Q96MD7 179 aa12.42□□□□□ -0.42
COL7A1-205ENST00000465238 TRBV20OR9-2A0A075B6H5 130 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 PGPEP1LA6NFU8 196 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 C9JCJ5 164 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 RTL8CO15255 209 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 RNASE3P12724 160 aaKnown RBP12.41□□□□□ -0.42
COL7A1-205ENST00000465238 RNF212Q495C1 297 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 ZNF876PQ49A33 203 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 DNLZQ5SXM8 178 aa12.41□□□□□ -0.42
COL7A1-205ENST00000465238 IGHV3-53P01767 116 aa12.4□□□□□ -0.42
COL7A1-205ENST00000465238 SRP19P09132 144 aaKnown RBP12.4□□□□□ -0.42
COL7A1-205ENST00000465238 PEA15Q15121 130 aa12.4□□□□□ -0.42
COL7A1-205ENST00000465238 IL36BQ9NZH7 164 aa12.4□□□□□ -0.42
COL7A1-205ENST00000465238 H3BVH4 76 aa12.39□□□□□ -0.43
COL7A1-205ENST00000465238 ARMS2P0C7Q2 107 aa12.39□□□□□ -0.43
COL7A1-205ENST00000465238 HOXA5P20719 270 aa12.39□□□□□ -0.43
COL7A1-205ENST00000465238 RPL19P84098 196 aaKnown RBP12.39□□□□□ -0.43
COL7A1-205ENST00000465238 OR4C5Q8NGB2 326 aa12.39□□□□□ -0.43
COL7A1-205ENST00000465238 OCC1Q8TAD7 63 aa12.39□□□□□ -0.43
COL7A1-205ENST00000465238 PTH2Q96A98 100 aa12.39□□□□□ -0.43
COL7A1-205ENST00000465238 Q6ZR54 194 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 C15orf53Q8NAA6 179 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 SMIM7Q9BQ49 75 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 SMDT1Q9H4I9 107 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 PKD1P98161 4303 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 PCLOQ9Y6V0 5065 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 NACAE9PAV3 2078 aa12.38□□□□□ -0.43
COL7A1-205ENST00000465238 IGLV2-18A0A075B6J9 118 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 TRAV26-1A0A087WT03 109 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 TRAV4A0A0B4J268 109 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 TRGV4A0A0C4DH28 118 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 C19orf71A6NCJ1 209 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 ZNF727A8MUV8 499 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 P01737 135 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 CXCL1P09341 107 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 SYT8Q8NBV8 401 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 ZNF479Q96JC4 524 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 PHLDA3Q9Y5J5 127 aa12.37□□□□□ -0.43
COL7A1-205ENST00000465238 A0A0J9YY99 117 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 NUDT3O95989 172 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 SFTA3P0C7M3 94 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 MED14OSP0DP75 135 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 RPS20P60866 119 aaKnown RBP12.36□□□□□ -0.43
COL7A1-205ENST00000465238 SLAQ13239 276 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 SOHLH1Q5JUK2 328 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 ZNF575Q86XF7 245 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 OR2D3Q8NGH3 330 aa12.36□□□□□ -0.43
COL7A1-205ENST00000465238 FAM3BP58499 235 aaPredicted RBP12.35□□□□□ -0.43
COL7A1-205ENST00000465238 SRSF3P84103 164 aaKnown RBP12.35□□□□□ -0.43
COL7A1-205ENST00000465238 IFITM2Q01629 132 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 FHL2Q14192 279 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 CLLU1Q5K131 121 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 PIK3CD-AS1Q5SR53 167 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 NUDT10Q8NFP7 164 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 NUDT11Q96G61 164 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 PRO0255Q9UI72 69 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 LY96Q9Y6Y9 160 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 DNAH11Q96DT5 4516 aa12.35□□□□□ -0.43
COL7A1-205ENST00000465238 XKRY2A2RUG3 117 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 H3BNG1 76 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 K7EN84 100 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 RS1O15537 224 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 CIDEAO60543 219 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 FAM74A3Q4VXF1 159 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 SCRT2Q9NQ03 307 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 HHLA3Q9XRX5 114 aa12.34□□□□□ -0.43
COL7A1-205ENST00000465238 DYNC1H1Q14204 4646 aaKnown RBP12.34□□□□□ -0.43
COL7A1-205ENST00000465238 A8MWV9 139 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 C9JQL5 133 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 M0R381 172 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 PAX4O43316 350 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 CFAP126Q5VTH2 177 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 DMRTA1Q5VZB9 504 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 ZFP82Q8N141 532 aa12.33□□□□□ -0.44
COL7A1-205ENST00000465238 CRYBA4P53673 196 aa12.32□□□□□ -0.44
COL7A1-205ENST00000465238 TMEM241Q24JQ0 296 aa12.32□□□□□ -0.44
COL7A1-205ENST00000465238 VSIG2Q96IQ7 327 aa12.32□□□□□ -0.44
COL7A1-205ENST00000465238 RNASE7Q9H1E1 156 aaKnown RBP12.32□□□□□ -0.44
COL7A1-205ENST00000465238 GZMBP10144 247 aa12.31□□□□□ -0.44
COL7A1-205ENST00000465238 C1orf134Q5TEV5 83 aa12.31□□□□□ -0.44
COL7A1-205ENST00000465238 SSBP4Q9BWG4 385 aaPredicted RBP12.31□□□□□ -0.44
COL7A1-205ENST00000465238 RPP21Q9H633 154 aaKnown RBP12.31□□□□□ -0.44
COL7A1-205ENST00000465238 IGHV3-73A0A0B4J1V6 119 aa12.3□□□□□ -0.44
COL7A1-205ENST00000465238 SNAI2O43623 268 aa12.3□□□□□ -0.44
COL7A1-205ENST00000465238 GATCO43716 136 aaKnown RBP12.3□□□□□ -0.44
COL7A1-205ENST00000465238 OR5AL1P0C617 328 aa12.3□□□□□ -0.44
COL7A1-205ENST00000465238 ERVFC1-1P60608 527 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 207.1 ms