RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 FXYD2P54710 66 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 SPRNQ5BIV9 151 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 TEN1Q86WV5 123 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 SS18L2Q9UHA2 77 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 TCTEX1D4Q5JR98 221 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 NXPH4O95158 308 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 RPL32P62910 135 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 TTTY13Q9BZ97 58 aa14.82□□□□□ -0.04
CCDC88B-204ENST00000463837 DAD1P61803 113 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 HAMPP81172 84 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 EML6Q6ZMW3 1958 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 G3V4G9 280 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 ELANEP08246 267 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 MED14OSP0DP75 135 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 APOC4P55056 127 aa14.81□□□□□ -0.04
CCDC88B-204ENST00000463837 HERV-K104P63124 156 aa14.8□□□□□ -0.04
CCDC88B-204ENST00000463837 ATP6V0E2Q8NHE4 81 aa14.8□□□□□ -0.04
CCDC88B-204ENST00000463837 CRYBA4P53673 196 aa14.8□□□□□ -0.04
CCDC88B-204ENST00000463837 WFDC2Q14508 124 aa14.8□□□□□ -0.04
CCDC88B-204ENST00000463837 CTSGP08311 255 aa14.79□□□□□ -0.04
CCDC88B-204ENST00000463837 RS1O15537 224 aa14.79□□□□□ -0.04
CCDC88B-204ENST00000463837 CRYGCP07315 174 aa14.79□□□□□ -0.04
CCDC88B-204ENST00000463837 F8WEM9 126 aa14.79□□□□□ -0.04
CCDC88B-204ENST00000463837 COL4A4P53420 1690 aaPredicted RBP14.79□□□□□ -0.04
CCDC88B-204ENST00000463837 TOMM6Q96B49 74 aa14.79□□□□□ -0.04
CCDC88B-204ENST00000463837 GTF3C1Q12789 2109 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 TINCRA0A1B0GVN0 87 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 TEX22C9J3V5 150 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 E9PLD3 99 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 ZFP2Q6ZN57 461 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 BUB3O43684 328 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 ZNF295-AS1Q8N0V1 137 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 RPL39LQ96EH5 51 aaKnown RBP14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 IGHV7-81A0A0B4J1V7 117 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 CRIP3Q6Q6R5 217 aa14.78□□□□□ -0.04
CCDC88B-204ENST00000463837 F5H768 121 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 SUMO4Q6EEV6 95 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 IGF2-ASQ6U949 168 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 C9orf47Q6ZRZ4 202 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 ZNF503Q96F45 646 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 MED13Q9UHV7 2174 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 RITA1Q96K30 269 aa14.77□□□□□ -0.04
CCDC88B-204ENST00000463837 ODF1Q14990 250 aa14.77□□□□□ -0.05
CCDC88B-204ENST00000463837 IGLV2-8P01709 118 aa14.77□□□□□ -0.05
CCDC88B-204ENST00000463837 OBSL1O75147 1896 aa14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 ALPK3Q96L96 1907 aa14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 FAM208BQ5VWN6 2430 aa14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 C16orf54Q6UWD8 224 aa14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 CENPVL3A0A0U1RRI6 287 aa14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 TMEM126AQ9H061 195 aa14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 TNRC6AQ8NDV7 1962 aaKnown RBP14.76□□□□□ -0.05
CCDC88B-204ENST00000463837 TIMM17AQ99595 171 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 CRLF1O75462 422 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 FOXI1Q12951 378 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 RNF152Q8N8N0 203 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 DKK4Q9UBT3 224 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 TTC28Q96AY4 2481 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 Q6ZPA2 131 aa14.75□□□□□ -0.05
CCDC88B-204ENST00000463837 ARHGAP21Q5T5U3 1957 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 BAALC-AS2P0C853 105 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 CDK2AP2O75956 126 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 PIFOQ8TCI5 191 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 DYSFO75923 2080 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 MUC6Q6W4X9 2439 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 PLA2G5P39877 138 aa14.74□□□□□ -0.05
CCDC88B-204ENST00000463837 A4D1N5 150 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 SLC25A29Q8N8R3 303 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 KIAA1549LQ6ZVL6 1849 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 IGLV1-47P01700 117 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 LINC01620Q4KN68 170 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 BAALCQ8WXS3 180 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 Q9H8V8 135 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 MUSTN1Q8IVN3 82 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 LINC00574Q9H8X3 128 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 ICOSQ9Y6W8 199 aa14.73□□□□□ -0.05
CCDC88B-204ENST00000463837 BDP1A6H8Y1 2624 aa14.72□□□□□ -0.05
CCDC88B-204ENST00000463837 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-204ENST00000463837 IGKV2-29A2NJV5 120 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-204ENST00000463837 C11orf86A6NJI1 115 aa14.72□□□□□ -0.05
CCDC88B-204ENST00000463837 MRPL36Q9P0J6 103 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-204ENST00000463837 IGKV1D-37A0A075B6S9 117 aa14.71□□□□□ -0.05
CCDC88B-204ENST00000463837 EIF4EBP1Q13541 118 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-204ENST00000463837 DSCR8Q96T75 97 aa14.71□□□□□ -0.05
CCDC88B-204ENST00000463837 ZNF561-AS1K7EIQ3 104 aa14.71□□□□□ -0.06
CCDC88B-204ENST00000463837 ATRXP46100 2492 aa14.71□□□□□ -0.06
CCDC88B-204ENST00000463837 Q71RC1 249 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 MBD6Q96DN6 1003 aa14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 PLCE1Q9P212 2302 aa14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 BRWD1-AS2P59051 145 aa14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 RMI2Q96E14 147 aa14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 ZFHX2Q9C0A1 2572 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 VPREB3Q9UKI3 123 aa14.7□□□□□ -0.06
CCDC88B-204ENST00000463837 E7EUB6 86 aa14.69□□□□□ -0.06
CCDC88B-204ENST00000463837 H0YGX0 51 aa14.69□□□□□ -0.06
CCDC88B-204ENST00000463837 ORMDL1Q9P0S3 153 aa14.69□□□□□ -0.06
CCDC88B-204ENST00000463837 A0A0J9YXV3 536 aa14.69□□□□□ -0.06
CCDC88B-204ENST00000463837 RBMY1FQ15415 496 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-204ENST00000463837 MLST8Q9BVC4 326 aa14.69□□□□□ -0.06
CCDC88B-204ENST00000463837 SMIM20Q8N5G0 67 aa14.68□□□□□ -0.06
CCDC88B-204ENST00000463837 CGB3P0DN86 165 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms